Table 1 Sequences of primers used for characterization of LsLGPs.

From: Small, charged proteins in salmon louse (Lepeophtheirus salmonis) secretions modulate Atlantic salmon (Salmo salar) immune responses and coagulation

Gene

Forward (5ʹ → 3ʹ)

Reverse (5ʹ → 3ʹ)

Use

LsLGP1L

AAACAATGGCTATAAAATGAATAATCCCATT

GAATAACCTCGTCATTCAGAATAACACCCT

RACE

LsLGP1

AAAACGAAGAGACAGTTGTCCCAAATT

CGTCATTCAGAATAACATCGTTTTTCTC

RACE

LsLGP1/1L

GGAGTATACAAGTACATCATGAAAGGAACA

CAGAAAGATATTGTGACATTTAGTTCAAAA

ORF

LsLGP1/1L

ATTCTTAATGAAGAATCTGGTGAGGGA

TTTTGAACTAAATGTCACAATATCTTTCTG

IS/RNAi

LsLGP1L

AAACAATGGCTATAAAATGAATAATCCCATT

GAATAACCTCGTCATTCAGAATAACACCCT

qPCR

LsLGP1

AAAACGAAGAGACAGTTGTCCCAAATT

CGTCATTCAGAATAACATCGTTTTTCTC

qPCR

LsLGP2

TGCACCTGCACCAGCACCTGCACCA

TGGTGCTGGTGGCGGTGCAATTCCA

RACE

LsLGP2

TGTTTTAAACTCAATGATGCATTGGCAACC

TTTAATGATCGAAAACGATGGGTAC

ORF

LsLGP2

GCAAATCCGGGAAAAGAAATCCAAG

TCGAAAACGATGGGTACGTCTC

IS/RNAi

LsLGP2

GCTCTCCTTAGTATCTTTATTTTGGGCTCC

ACACGTAAGCACAGCTTGTGGATGC

qPCR

LsLGP3

CCAGTGGGCTCCAATCCTAGTGAA

AGTTTGGGCTGTTGTTCCGGTT

RACE

LsLGP3

ATGAAACTAATATTTTCAAGTTTGATTACA

TTAGATATCTGTGTAATAAGTTTGGGCTGT

ORF

LsLGP3

CCAGTGGGCTCCAATCCTAGTGAA

AGTTTGGGCTGTTGTTCCGGTT

IS/RNAi

LsLGP3

TCAAGAAGGATTTGAAAAGTTGACGAATG

TGCCCGATTGTTCCATAATTCCGTT

qPCR

LsLGP3

CAGTCAGCTCTTCTAGTCAGCACGGTATTCGAGTGAAG

 

RecLGP4

LsLGP4

GAACAACGCAATCTGGACAA

CGGAGAGTACTTTAACATGAGTCA

RACE

LsLGP4

TGTTTTTTCAAGATCGACTCTTCCAATGG

TTAATCACTCTCGGAGAGTACTTTAACATG

ORF

LsLGP4

GAACAACGCAATCTGGACAA

CGGAGAGTACTTTAACATGAGTCA

IS/RNAi

LsLGP4

TGTTTTTTCAAGATCGACTCTTCCAATGG

AGCACCTTTCTTTTTTGCAAGTTCCATA

qPCR

LsEF1α

GGTCGACAGACGTACTGGTAAATCC

TGCGGCCTTGGTGGTGGTTC

qPCRref (ref)

LsADT3

CTGGAGAGGGAATTTGGCTAACGTG

GACCCTGGACACCGTCAGACTTCA

qPCRref (ref)

  1. Primers were used in rapid amplification of cDNA ends (RACE), confirming the open reading frame (ORF), synthesis of RNA probes for in situ hybridization (IS) and double stranded RNA for RNA interference (RNAi), production of recombinant LsLGP3 (recLGP3), and for real time RT-PCR both target genes (qPCR) and reference genes (qPCRref). Gene name abbreviations: Lepeophtheirus salmonis (Ls), labial gland protein (LGP), elongation factor (EF), and adenine nucleotide translocator (ADT).