Table 1 Assembly summary statistics applied to the different assemblies of Alternaria dauci genome data set.

From: Characterization of NRPS and PKS genes involved in the biosynthesis of SMs in Alternaria dauci including the phytotoxic polyketide aldaulactone

Assembly

Published genome55

AGOUTI re-assembly

CSAR scaffolding

No. of contigs/scaffolds

12,030

11,056

7594

No. of contigs/scaffolds (> 100 bp)

4010

3139

553

N50 (bp)

13,282

18,857

4,493,962

L50

736

507

3

Maximal length

(> 100 bp)

73,673

104,835

6,771,279

Genome size (Mb)

32.1

33.1

33.4

GC (%)

51.61

51.61

50.68

No. of N per 100 kbp

83.19

3157.84

4021.31

No. of predicted genes

11,981

12,388

12,939

  1. AGOUTI re-assembly: re-assembly by the AGOUTI tool56 of the published genome51 helped by FRA001 transcriptome data obtained in this study. CSAR scaffolding: reference-based (A. solani genome57) genome re-assembly with the CSAR tool58. N50: length of the shortest contig/scaffold in the smallest subset of contigs whose length sum makes up half of genome size. L50 number of contigs in that subset. GC (%): guanine-cytosine content.
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