Figure 3

Heatmap of the differentially expressed transcripts (isoforms) in P. contorta needles that were asymptomatic (ASYM) and symptomatic (SYM) of Lophodermella concolor (LC) or L. montivaga (LM) based on counts per million (CPM) reads. Trinity transcripts shown are the top 10 differentially expressed features (p-value < 0.001, fold change ≥ 2) within each of the four pairwise comparisons. Similar colors at tree tips represent replicate samples within each of the following treatments: LC_ASYM (purple), LC_SYM (blue), LM_ASYM (green), and LM_SYM (red).