Table 2 Metabarcoding and metatranscriptome profile of Pinus contorta needle samples.

Disease symptom	Sample	DNA contigs (metabarcoding)		Raw RNA reads*	Paired reads that aligned concordantly to the assembly ≥ 1 time (%)	Overall rate (%) of alignment to the assembly
Disease symptom	Sample	L. concolor	L. montivaga	Raw RNA reads*		Overall rate (%) of alignment to the assembly
Asymptomatic	CS02-18CN	1014	173	21,337,962	78.82	93.4
Asymptomatic	TC01-19CN	2386	3706	24,537,902	79.75	93.56
Symptomatic	CS02-18CP	26,149	84	20,416,050	66.61	87.89
Symptomatic	SR10-19CP	22,791	0	21,485,100	71.65	91.68
Asymptomatic	LV02-18MN	22,078	18,744	22,184,468	78.33	89.96
	LV03-18MN	522	4785	25,400,132	73.79	86.48
	SR09-18MN	26,245	1422	30,543,904	77.44	94.48
Symptomatic	LV02-18MP	0	20,353	20,609,968	79.88	92.06
	NC04-18MP^†	3	63,789	24,456,808	77.26	92.70
	SR09-18MP	0	43,121	26,930,926	78.37	92.76

Proportions (%) of raw reads that aligned to the metatranscriptome assembly and the overall alignment rate are also shown.
Cross (^†) represents samples excluded from the analyses.
*Number of RNA reads per sample annotated as fungi through concatenated databases of NCBI-nr and JGI Mycocosm is listed on Table S4.

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