Table 8 Table of allele counts for SNP i (\(i=1\ldots M\)) in the \(\ell \) -th GWAS (\(\ell =1\ldots L\)).
From: Reconstructing SNP allele and genotype frequencies from GWAS summary statistics
| Â | \(A_1\) (effective allele) | \(A_2\) (non-effective allele) | Number of alleles |
|---|---|---|---|
Cases | \(a_{i\ell }^{\text {cse}}\) | \(u_{i\ell }^{\text {cse}}\) | \(2N^{\text {cse}}_{\ell }\) |
Controls | \(a_{i\ell }^{\text {cnt}}\) | \(u_{i\ell }^{\text {cnt}}\) | \(2N^{\text {cnt}}_{\ell }\) |
