Table 5 Characteristic mutations of SARS-CoV-2 delta variant from cat (AY.30) and dog (AY.85) and reference viruses.

From: SARS-CoV-2 delta variant infection in domestic dogs and cats, Thailand

Characteristic mutation (AY.30)

Virus

GISAID#

Location

Species

Date

Lineage

Amino acid substitution/ deletion a

      

Spike gene

      

T19R

E156G

F157del

R158del

L452R

T478K

D614G

P681R

D950N

 

Wuhan-Hu-1

NC_045512.2

China

Human

Dec-19

B

T

E

F

R

L

T

D

P

D

 

AFRIMS-COV1370-2021

MZ888533

Thailand

Human

Jun-21

B.1.617.2.30

R

G

157del

158del

R

K

G

R

N

 

AFRIMS-COV2513-2021

MZ888556

Thailand

Human

Aug-21

B.1.617.2.30

R

G

157del

158del

R

K

G

R

N

 

CUA21611

EPI_ISL_4488568

Thailand

Human

Jul-21

B.1.617.2.30

R

G

157del

158del

R

K

G

R

N

 

CU27516a

EPI_ISL_5320246

Thailand

Cat

Jul-21

B.1.617.2.30

R

G

157del

158del

R

K

G

R

N

 

AFRIMS-COV3783-2021

OK626714

Thailand

Human

Jul-21

B.1.617.2.85

R

G

157del

158del

R

K

G

R

N

 

CU27791b

EPI_ISL_5315539

Thailand

Dog

Sep-21

B.1.617.2.85

R

G

157del

158del

R

K

G

R

N

 
      

ORF1a

N

      

P309L

P1640L

H2092Y

V3718A

 

D63G

L139F

R203M

D377Y

R385K

Wuhan-Hu-1

NC_045512.2

China

Human

Dec-19

B

P

P

H

V

 

D

L

R

D

R

AFRIMS-COV1370-2021

MZ888533

Thailand

Human

Jun-21

B.1.617.2.30

L

L

Y

A

 

G

F

M

Y

K

AFRIMS-COV2513-2021

MZ888556

Thailand

Human

Aug-21

B.1.617.2.30

L

L

Y

A

 

G

F

M

Y

K

CUA21611

EPI_ISL_4488568

Thailand

Human

Jul-21

B.1.617.2.30

L

L

Y

A

 

G

F

M

Y

K

CU27516a

EPI_ISL_5320246

Thailand

Cat

Jul-21

B.1.617.2.30

L

L

Y

A

 

G

F

M

Y

K

AFRIMS-COV3783-2021

OK626714

Thailand

Human

Jul-21

B.1.617.2.85

P

P

H

V

 

G

L

M

Y

R

CU27791b

EPI_ISL_5315539

Thailand

Dog

Sep-21

B.1.617.2.85

P

P

H

V

 

G

L

M

Y

R

      

ORF3a

M

ORF7a

  

ORF8

    
      

S26L

I82T

V82A

L116F

T120I

S84L

D119del

F120del

  

Wuhan-Hu-1

NC_045512.2

China

Human

Dec-19

B

S

I

V

L

T

L

D

F

  

AFRIMS-COV1370-2021

MZ888533

Thailand

Human

Jun-21

B.1.617.2.30

L

T

A

F

I

L

119del

120del

  

AFRIMS-COV2513-2021

MZ888556

Thailand

Human

Aug-21

B.1.617.2.30

L

T

A

F

I

L

119del

120del

  

CUA21611

EPI_ISL_4488568

Thailand

Human

Jul-21

B.1.617.2.30

L

T

A

F

I

L

119del

120del

  

CU27516a

EPI_ISL_5320246

Thailand

Cat

Jul-21

B.1.617.2.30

L

T

A

F

I

L

119del

120del

  

AFRIMS-COV3783-2021

OK626714

Thailand

Human

Jul-21

B.1.617.2.85

L

T

A

L

I

L

119del

120del

  

CU27791b

EPI_ISL_5315539

Thailand

Dog

Sep-21

B.1.617.2.85

L

T

A

L

I

L

119del

120del

  

Characteristic mutation (AY.85)

Virus

GISAID#

Location

Species

Date

Lineage

Amino acid substitution/ deletion a

      

Spike gene

      

T19R

T95I

E156G

F157del

R158del

L452R

T478K

D614G

P681R

D950N

Wuhan-Hu-1

NC_045512.2

China

Human

Dec-19

B

T

T

E

F

R

L

T

D

P

D

AFRIMS-COV1370-2021

MZ888533

Thailand

Human

Jun-21

B.1.617.2.30

T

T

G

157del

158del

R

K

G

R

N

AFRIMS-COV2513-2021

MZ888556

Thailand

Human

Aug-21

B.1.617.2.30

R

T

G

157del

158del

R

K

G

R

N

CUA21611

EPI_ISL_4488568

Thailand

Human

Jul-21

B.1.617.2.30

R

T

G

157del

158del

R

K

G

R

N

CU27516a

EPI_ISL_5320246

Thailand

Cat

Jul-21

B.1.617.2.30

R

T

G

157del

158del

R

K

G

R

N

AFRIMS-COV3783-2021

OK626714

Thailand

Human

Jul-21

B.1.617.2.85

R

I

G

157del

158del

R

K

G

R

N

CU27791b

EPI_ISL_5315539

Thailand

Dog

Sep-21

B.1.617.2.85

R

I

G

157del

158del

R

K

G

R

N

      

ORF1a

N

      

E148G

A1306S

P2046L

P2287S

V2930L

T3255I

D63G

R203M

G215C

D377Y

Wuhan-Hu-1

NC_045512.2

China

Human

Dec-19

B

E

A

P

P

V

T

D

R

G

D

AFRIMS-COV1370-2021

MZ888533

Thailand

Human

Jun-21

B.1.617.2.30

E

A

P

P

V

T

G

M

G

Y

AFRIMS-COV2513-2021

MZ888556

Thailand

Human

Aug-21

B.1.617.2.30

E

A

P

P

V

T

G

M

G

Y

CUA21611

EPI_ISL_4488568

Thailand

Human

Jul-21

B.1.617.2.30

E

A

P

P

V

T

G

M

G

Y

CU27516a

EPI_ISL_5320246

Thailand

Cat

Jul-21

B.1.617.2.30

E

A

P

P

V

T

G

M

G

Y

AFRIMS-COV3783-2021

OK626714

Thailand

Human

Jul-21

B.1.617.2.85

G

S

L

S

L

I

G

M

C

Y

CU27791b

EPI_ISL_5315539

Thailand

Dog

Sep-21

B.1.617.2.85

E

S

L

S

L

I

G

M

C

Y

      

ORF3a

 

E

M

ORF7a

 

ORF7b

ORF8

  
      

S26L

L140F

V62F

I82T

V82A

T120I

T40I

S84L

D119del

F120del

Wuhan-Hu-1

NC_045512.2

China

Human

Dec-19

B

S

L

V

I

V

T

T

L

D

F

AFRIMS-COV1370-2021

MZ888533

Thailand

Human

Jun-21

B.1.617.2.30

L

L

V

T

A

I

T

L

119del

120del

AFRIMS-COV2513-2021

MZ888556

Thailand

Human

Aug-21

B.1.617.2.30

L

L

V

T

A

I

T

L

119del

120del

CUA21611

EPI_ISL_4488568

Thailand

Human

Jul-21

B.1.617.2.30

L

L

V

T

A

I

T

L

119del

120del

CU27516a

EPI_ISL_5320246

Thailand

Cat

Jul-21

B.1.617.2.30

L

L

V

T

A

I

T

L

119del

120del

AFRIMS-COV3783-2021

OK626714

Thailand

Human

Jul-21

B.1.617.2.85

L

F

F

T

A

I

I

L

119del

120del

CU27791b

EPI_ISL_5315539

Thailand

Dog

Sep-21

B.1.617.2.85

L

F

F

T

A

I

I

L

119del

120del

  1. aSARS-CoV-2 characterized in this study.
  2. bSARS-CoV-2 characterized in this study.
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