Table 1 Gene content and functional classification of L. ledebourii chloroplast genome.

From: Complete chloroplast genome of Lilium ledebourii (Baker) Boiss and its comparative analysis: lights into selective pressure and adaptive evolution

Category

Gene group

Gene name

Photosynthesis pathways

ATP synthase

atpA, atpB, atpE, atpF*, atpH, atpI

NADH-dehydrogenase

ndhA*, ndhB*, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK,

Cytochrome b/f complex

petA, petB*, petD*, petG, petL, petN

Photosystem I

psaA, psaB, psaC, psaI, psaJ

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Rubisco

rbcL

Transcription and translation related genes

DNA-dependent RNA polymerase

rpoA, rpoB, rpoC1*, rpoC2

Ribosomal proteins

Large subunit of ribosomal proteins

rpl2*, rpl14, rpl16*, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36

Small subunit of ribosomal proteins

rps2, rps3, rps4, rps7, rps8, rps11, rps12*a, rps14, rps15, rps16*, rps18, rps19

RNA genes

Ribosomal RNA

rrn4.5 (× 2), rrn5 (× 2), rrn16 (× 2), rrn23 (× 2)

Transfer RNA

trnA-UGC* (× 2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC*, trnH-GUG (× 2), trnI-CAU (× 2), trnI-GAU* (× 2), trnK-UUU*, trnL-CAA (× 2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU (× 2), trnP-UGG, trnQ-UUG, trnR-ACG (× 2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC (× 2), trnV-UAC*, trnW-CCA, trnY-GUA

Other genes

Maturase K

matK

Subunit of acetyl-CoAcarboxylase

accD

C-type cytochrome synthesis gene

ccsA

Envelope membrane protein

cemA

ATP-dependent protease subunit P

clpP**

Translational initiation factor

infAψ

Conserved hypothetical open reading frames

ycf1, ycf2, ycf3**, ycf4

  1. *Gene with one intron; **gene with two introns; (×2) duplicated gene; atrans-spliced gene; ψ: pseudogene.
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