Table 3 The Relative synonymous codon usage (RSCU) of L. ledebourii protein-coding genes.
Codon | AA | ObsFreq | RSCU | Codon | AA | ObsFreq | RSCU |
|---|---|---|---|---|---|---|---|
UAA | a | 68 | 1.468 | AUG | M | 552 | 1 |
UAG | a | 41 | 0.885 | AAC | N | 216 | 0.422 |
UGA | a | 30 | 0.647 | AAU | N | 808 | 1.578 |
GCA | A | 345 | 1.151 | CCA | P | 254 | 1.121 |
GCC | A | 186 | 0.621 | CCC | P | 184 | 0.812 |
GCG | A | 125 | 0.417 | CCG | P | 116 | 0.512 |
GCU | A | 543 | 1.812 | CCU | P | 352 | 1.554 |
UGC | C | 62 | 0.486 | CAA | Q | 573 | 1.504 |
UGU | C | 193 | 1.514 | CAG | Q | 189 | 0.496 |
GAC | D | 175 | 0.411 | AGA | R | 401 | 1.519 |
GAU | D | 676 | 1.589 | AGG | R | 127 | 0.481 |
GAA | E | 859 | 1.511 | CGA | R | 298 | 1.53 |
GAG | E | 278 | 0.489 | CGC | R | 81 | 0.416 |
UUC | F | 435 | 0.691 | CGG | R | 109 | 0.56 |
UUU | F | 824 | 1.309 | CGU | R | 291 | 1.494 |
GGA | G | 588 | 1.581 | AGC | S | 86 | 0.383 |
GGC | G | 171 | 0.46 | AGU | S | 363 | 1.617 |
GGG | G | 253 | 0.68 | UCA | S | 352 | 1.149 |
GGU | G | 476 | 1.28 | UCC | S | 259 | 0.846 |
CAC | H | 108 | 0.408 | UCG | S | 144 | 0.47 |
CAU | H | 421 | 1.592 | UCU | S | 470 | 1.535 |
AUA | I | 647 | 1 | ACA | T | 353 | 1.253 |
AUC | I | 365 | 0.564 | ACC | T | 205 | 0.728 |
AUU | I | 929 | 1.436 | ACG | T | 115 | 0.408 |
AAA | K | 837 | 1.499 | ACU | T | 454 | 1.611 |
AAG | K | 280 | 0.501 | GUA | V | 456 | 1.482 |
CUA | L | 289 | 1.115 | GUC | V | 161 | 0.523 |
CUC | L | 160 | 0.617 | GUG | V | 167 | 0.543 |
CUG | L | 135 | 0.521 | GUU | V | 447 | 1.452 |
CUU | L | 453 | 1.747 | UGG | W | 399 | 1 |
UUA | L | 782 | 1.271 | UAC | Y | 162 | 0.393 |
UUG | L | 449 | 0.729 | UAU | Y | 662 | 1.607 |
