Table 2 Genes encoded by two Launaea and eight Reichardia chloroplast genomes.

From: Phylogenomic insight into dysploidy, speciation, and plastome evolution of a small Mediterranean genus Reichardia (Cichorieae; Asteraceae)

Category

Group

Genes

Photosynthesis

Subunits_of_photosystem_I

psaA, psaB, psaC, psaI, and psaJ

Subunits_of_photosystem_II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, and psbZ

Subunits_of_NADH_dehydrogenase

ndhA*, ndhB(\(\times\)2)*, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, and ndhK

Subunits_of_cytochrome_b/f_complex

petA, petB*, petD*, petG, petL, and petN

Subunits_of_ATP_synthase

atpA, atpB, atpE, atpF*, atpH, and atpI

Large_subunit_of_Rubisco

rbcL

Self-replication

Large_subunits_of_ribosome

rpl2(\(\times\)2)*, rpl14, rpl16*, rpl20, rpl22, rpl23(\(\times\)2), rpl32, rpl33, and rpl36

Small_subunits_of_ribosome

rps2, rps3, rps4, rps7(\(\times\)2), rps8, rps11, rps12 (\(\times\)2)**, rps14, rps15, rps16*, rps18, and rps19

DNA-dependent_RNA_polymerase

rpoA, rpoB, rpoC1*, and rpoC2

translation initiation factor

infA

Ribosomal_RNAs

rrn5(\(\times\)2), rrn16(\(\times\)2), and rrn23(\(\times\)2)

Transfer_RNAs

trnA-UGC(\(\times\)2)*, trnC-GCA, trnD-GUC, trnE-UUC(\(\times\)3)*, trnF-GAA, trnG-GCC, trnH-GUG, trnK-UUU*, trnL-CAA(\(\times\)2)*, trnL-UAA, trnL-UAG, trnM-CAU(\(\times\)4), trnN-GUU(\(\times\)2), trnP-UGG, trnQ-UUG, trnR-ACG(\(\times\)2), trnR-UCU, trnS-CGA, trnS-GCU*, trnS-GGA, trnS-UGA, trnS-GGU, trnT-UGU, trnV-GAC(\(\times\)2), trnV-GCA, trnW-CCA, and trnY-GUA

Other genes

Maturase

matK

Protease

clpP**

Envelope_membrane_protein

cemA

Acetyl-CoA_carboxylase

accD

C-type_cytochrome_synthesis_gene

ccsA

Genes of unknown function

Proteins_of_unknown_function

ycf1, ycf2(\(\times\)2), ycf3**, ycf4, ycf15(\(\times\)2)

  1. (×N) indicates the genes that have N copies. * and ** indicate genes containing one and two introns, respectively.