Table 1 Comparison between sequencing and RT-LAMP results for field samples.
Sample1 | Ct2 | Sequencing Results3 | RT-LAMP Results4 | ||
|---|---|---|---|---|---|
Variant | Replicate 1 | Replicate 2 | Replicate 3 | ||
B25 | 18.17 | Alpha | + | − | − |
B29 | 16.43 | Alpha | − | − | − |
B48 | 20.55 | Alpha | − | − | − |
B186 | 20.47 | Zeta | − | − | − |
B195 | 19.19 | B.1.1 | − | − | − |
B211 | 19.58 | Zeta | − | − | − |
B212 | 16.32 | Gamma | + | + | + |
B213 | 15.07 | Gamma | + | + | + |
B214 | 14.46 | P.1.12 | + | + | + |
B215 | 14.91 | Gamma | + | + | + |
B216 | 16.38 | P.1.7 | + | + | + |
B217 | 14.62 | Gamma | + | + | + |
B218 | 12.03 | Gamma | + | + | + |
B219 | 22.30 | Gamma | + | + | + |
B220 | 14.22 | Gamma | + | + | + |
B221 | 14.46 | Gamma | + | + | + |
B222 | 21.53 | Gamma | − | + | − |
B223 | 18.61 | Gamma | + | + | + |
B224 | 18.63 | Gamma | + | + | + |
B225 | 20.94 | Gamma | − | + | − |
B227 | 15.92 | Gamma | + | + | + |
B228 | 22.38 | Gamma | − | + | − |
B229 | 19.36 | Gamma | + | + | + |
B230 | 18.82 | Gamma | + | + | + |
B231 | 18.49 | Gamma | + | + | + |
B236 | 21.89 | Zeta | − | − | − |
B240 | 18.13 | Zeta | − | − | − |
B244 | 20.28 | P.7 | − | − | − |
B245 | 16.80 | P.7 | − | − | − |
B247 | 17.17 | Gamma | + | + | + |
F1 | 12.89 | Gamma | + | + | + |
F2 | 17.51 | P.1.7 | + | + | + |
F3 | 13.89 | Gamma | + | + | + |
F4 | 19.44 | P.1.7 | + | + | + |
F5 | 17.20 | P.1.7 | + | + | + |
F6 | 16.30 | Gamma | + | + | + |
F7 | 21.98 | P.1.7 | + | + | + |
F8 | 20.48 | P.1.7 | + | + | + |
F9 | 21.26 | P.1.7 | + | + | + |
F10 | 15.92 | Gamma | + | + | + |
F11 | 21.97 | Delta | − | − | − |
F12 | 21.07 | Delta | − | − | − |
F13 | 20.61 | Delta | − | − | − |
F14 | 19.29 | Delta | − | − | − |
F15 | 18.11 | Delta | − | − | + |
F16 | 17.77 | Delta | − | − | + |
F17 | 16.01 | Delta | + | + | + |
F18 | 15.09 | Delta | + | + | + |
F19 | 15.96 | Delta | + | − | − |
F20 | 21.31 | Delta | − | − | − |
F21 | 22.55 | Omicron | − | − | − |
F22 | 21.27 | Omicron | − | − | − |
F23 | 20.20 | Omicron | − | − | − |
F24 | 19.13 | Omicron | − | − | − |
F25 | 17.41 | Omicron | − | − | − |
F26 | 21.96 | Omicron | − | − | − |
F27 | 20.76 | Omicron | − | − | − |
F28 | 19.89 | Omicron | − | − | − |
F29 | 18.51 | Omicron | − | − | − |
F30 | 15.44 | Omicron | − | − | − |
