Figure 5 | Scientific Reports

Figure 5

From: Estimation of model accuracy by a unique set of features and tree-based regressor

Figure 5

The ten most important (highest “GAIN”) features considering only the basic features (A) and all features (B). The features from top to bottom: sasaCompatibility—a measure of the agreement between the solvent accessible surface area of the model’s residues (as measured by DSSP65) and their predicted accessibility56. goap_ag—a pairwise orientation-dependent knowledge-based potential40. deepCNF8Compatibility—a measure of the agreement between the secondary structure (8 states) of the model’s residues (as measured by DSSP65) and their predicted secondary structure66. contacts8 and contacts14—the average numbers of contacts with thresholds of 8 Å and 14 Å, respectively, between carbon atoms. meshinr_dssp8Compatibility and meshirw_dssp8Compatibility_Weighted—two slightly different measures of the agreement between the secondary structure (8 states) of the model’s residues (as measured by DSSP65) and their predicted secondary structure59. scCarbonN—the number of carbon atoms in the model’s side-chains. coverage—the fraction of the target sequence, which the are modeled. SheetFraction—the fraction of beta-sheet resides within the residues with any secondary structure. consensus features—see Eqs. (14). gdt1_consensus_median—the median value of gdt1_consensus, among all the models of a specific target. hydrogenBondsPairs_median—the median value of a cooperative hydrogen bonds energy term67 among all the models of a specific target. cooperativeZstdRamachandranSidechain_median—the median value of a cooperative torsion angle energy term, among all the models of a specific target.

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