Table 2 Transcriptome-verified primers.

From: Transcriptomes reveal the involved genes in the sea urchin Mesocentrotus nudus exposed to high flow velocities

Genes ID

Name of genes

Primer sequence (3′–5′)

Temperature (°C)

TRINITY_DN21734_c1_g1

Deoxynucleoside triphosphate Triphosphohydrolase SAMHD1-like

F: AGGTTGTAAGAATCGCGGGCAAAG

R: GAATGGACGAGAACGGGAGAAACG

60

TRINITY_DN38553_c4_g3

Ankyrin repeat domain-containing protein 50-like

F: TGGCACTACAACGAATGTGACACC

R: CCCTGTTTACCTGTGCTCCTTGAC

60

TRINITY_DN26453_c0_g1

Oxysterols receptor LXR-beta isoform X1

F: CCATTGGTCTACCTCGCTTGTCAC

R: TCGGTATGTTGTTCTTGCCACTGG

60

TRINITY_DN18013_c1_g1

Ankyrin repeat, PH and SEC7 domain containing protein secG-like

F: TTCCTCTCCACCAGTGCTCCTTG

R: GCTTGACAATCTTGGTCGGACTCC

60

TRINITY_DN15354_c0_g3

Cilia- and flagella-associated protein 20

F: GGAGGGCATACGGCACAAACTAC

R: TCGGAGTACAGTCTGTCGGAGAAG

60

TRINITY_DN19286_c1_g2

Rotatin isoform X2

F: GTCCCACATCAACCCGCATCAC

R: ATCTTGGCGTTCAGCAGTTGTCTC

60

TRINITY_DN12454_c0_g1

Transmembrane protein 26

F: GGCTAAGTCCTTCGGTGGTTCTG

R: CCCATCCCTGTGAGTCCCTGTAG

60

TRINITY_DN29646_c2_g4

Myb-like protein X

F: AGAGCAGCGGCAACAACAAGG

R: CTGTGGACGAGGTGCTGATGATG

60

TRINITY_DN19656_c1_g2

 

F: AGAGCAGCGGCAACAACAAGG

R: CTGTGGACGAGGTGCTGATGATG

60

TRINITY_DN38219_c1_g5

LOC105440335, ncRNA

F: AGAGCAGCGGCAACAACAAGG

R: CTGTGGACGAGGTGCTGATGATG

60

TRINITY_DN32379_c0_g1

LOC100889934, mRNA

F: AGGTGATCGAAGCGGTGAATGC

R: TGCTCAATCGGTCAACCAGGAATC

60

TRINITY_DN37840_c3_g1

Pol-like protein

F: ACGGCAACTGTAGTACCTGCT

R: CATGTGTACCATATCAAGACCACCA

60

18 S

 

F: GTTCGAAGGCGAGCCATCAGATAC

R: CTGTCAATCCTCACTGTGTC

60