Table 4 The list of CNVs overlapped between Afghan and Iranian sheep breeds and the genes and their functions reported in these locations.
From: Genome-wide evaluation of copy gain and loss variations in three Afghan sheep breeds
CNVs positions in Afghan sheep | CNVs positions in Iranian sheep | Distance (kb) | The genes reported in this location | Function of the gene | References |
|---|---|---|---|---|---|
Chr1:242324429–242574074 | Chr1:241583858–241653162 | 671 | SLITRK3 | Milk production traits | |
Chr2:172582236–172616581 | Chr2:172272878–172424726 | 158 | MBD5 and EPC2 | Growth traits | |
Chr5:39479796–39659262 | Chr5:39400849–39585301 | 0 | COL23A1 | Fertility | |
Chr6:78371034–79041954 | Chr6:78371034–78600405 | 0 | EXOC1L | Reproduction | |
CEP135 | Milk production | ||||
AASDH | Metabolism | ||||
Chr6:78796013–79165093 | Chr6:79007752–79203136 | 0 | HOPX | Sperm traits | |
Chr8:52949829–52997226 | Chr8:52676280–52949829 | 0 | BACH2 | Immune system | |
Chr9:7615407–8155540 | Chr9:7838010–7948027 | 0 | |||
Chr10:19347073–19637375 | Chr10:18607317–18670320 | 677 | RUBCNL | Vertebrate autophagy | |
LRCH1 | Immune system | ||||
HTR2A | Adaptive traits | ||||
Chr10:66683508–66747944 | Chr10:65063529–65212062 | 977 | SLITRK6 | Milk production traits | |
Chr10:83028244–85695176 | Chr10:85120520–85216381 | 0 | HS6ST3 | Growth traits | |
STK24 | Immune response | ||||
SLC15A1 | Development of growth | ||||
GPR18 | Immune system | ||||
TM9SF2 | Fertility | ||||
DOCK9 | Disease resistance | ||||
Chr12:27323634–27702125 | Chr12:27961834–28032557 | 260 | DUSP10 | Immunity inflammation | |
Chr14:12743159–13111196 | Chr14:13401157–13465959 | 290 | FOXC2 | Immune system | |
Chr15:75842476–75936079 | Chr15:76144260–76212569 | 208 | |||
Chr16:47568518–47871748 | Chr16:46887875–47002471 | 566 | |||
Chr17:23675899–23828049 | Chr17:23538968–23738050 | 0 | |||
Chr17:23675899–23828049 | Chr17:23988299–24240466 | 0 | |||
Chr21:18899984–19383548 | Chr21:18655157–18820162 | 80 | LRFN4 | Ovarian cancer | |
Chr21:46501772–46700862 | Chr21:46501772–46628225 | 0 | TENM4 | Nervous system development | |
NARS2 | Energy deficiency disorders | ||||
Chr:25:14234573:14644765 | Chr25:14561562–14644765 | 0 | PHYHIPL | Growth and wool traits | |
Chr:25:34269680:34689602 | Chr25:34845271–34945170 | 156 | KCNMA1 | Growth traits | |
DLG5 | Muscle growth | ||||
POLR3A | Immune response | ||||
RPS24 | Heat stress |
