Table 3 Potential molecular interactions and binding affinities of AFM1 with histone proteins.
Macromolecule | Free energy of binding (kcal/mol) | Inhibition constant (Ki) | Hydrogen bond interactions | Hydrophobic interactions |
|---|---|---|---|---|
Histone H3.1 | − 5.30 | 131.29 µM | THR59 (×2) | VAL62 (×4), LEU63, LEU97 |
Histone H4 | − 5.43 | 105.48 µM | PHE70, VAL66 | ILE69, ILE73 (×4), ALA110, ILE94, VAL98, PHE70 |
Histone H2A | − 6.92 | 8.44 µM | ARG72 (×2), GLN76 | ARG72, ALA75, LEU82, ARG83, PHE84 |
Histone H2B type 1-A | − 5.05 | 198.56 µM | LYS59 (×2) | ILE26, LEU62 (×3), LYS59 (×2), ILE66, ILE29, LEU58 |