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Figure 1

From: Unveiling new perspective of phylogeography, genetic diversity, and population dynamics of Southeast Asian and Pacific chickens

Figure 1

(a) Bayesian phylogenetic tree of complete mtDNA D-loop nucleotide sequences of Southeast Asian and Pacific chickens. The tree was constructed together with database sequences defined by Huang et al.31 (Supplementary Table S4). Node labels correspond to posterior probability support values. Identified haplogroups are assigned with color codes, while grey color is assigned for reference haplogroup nomenclatures with no classified samples. Tips highlighted in red indicate red junglefowl. (b) Schematic classification tree showed reclassified macrohaplogroup CDV. The nucleotide positions were scored relative to the reference sequence NC_040970. Mutational motifs (transitions) are shown on the branches. Haplotypes in italics and asterisk indicate red junglefowl. Tree file was visualized and edited in FigTree v1.4.4. (http://tree.bio.ed.ac.uk/software/figtree/).

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