Table 1 Genetic diversity indices of Southeast Asian and Pacific chicken populations estimated using complete mtDNA D-loop sequences.

From: Unveiling new perspective of phylogeography, genetic diversity, and population dynamics of Southeast Asian and Pacific chickens

Region

Molecular diversity indices

Neutrality tests

N

Ht

Hd

π

Tajima’s D

Fu’s FS

Cambodia

173

54

0.889 ± 0.019

0.00585 ± 0.00030

− 0.3677

− 22.826**

Laos

63

27

0.935 ± 0.013

0.00678 ± 0.00028

0.7429

− 4.4319

Thailand

25

19

0.953 ± 0.029

0.00912 ± 0.00051

0.5534

− 4.0472*

Myanmar

78

35

0.922 ± 0.016

0.00837 ± 0.00020

0.7659

− 6.6700

Philippines

135

36

0.900 ± 0.013

0.00435 ± 0.00027

0.0318

− 11.1450**

Fiji

24

7

0.725 ± 0.077

0.00380 ± 0.00036

1.1958

2.1475

Pacific overalla

35

15

0.862 ± 0.047

0.00386 ± 0.00215

− 0.5632

− 2.8581

MSEA overallb

339

91

0.963 ± 0.005

0.00782 ± 0.00398

− 0.2515*

− 24.037**

ISEA overallc

145

41

0.942 ± 0.009

0.00466 ± 0.00249

− 0.2570

− 16.235**

  1. aIncluded published sequences of Pacific chickens (n = 11).
  2. bCombined sequences representing MSEA (Cambodia, Laos, Thailand, and Myanmar chickens).
  3. cCombined sequences representing ISEA (Philippine chickens and database sequences of Indonesian chickens; n = 10).
  4. N number of sequences, Ht number of haplotypes, Hd haplotype (gene) diversity, π nucleotide diversity.
  5. * p < 0.05; ** p < 0.01.
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