Figure 3
Maximum likelihood consensus phylogenies for STs with patient-pairs of interest. (a) ST-12, (b) ST-103, (c) ST-145, (d) ST-321, (e) ST-393, and (f) ST-1034. Publicly available genomes are indicated by their BioSample accessions. Isolates colored red belong to patient-pairs with possibly transmitted isolates and are separated by p-distances smaller than the threshold (1.68 × 10−5 SNPs per site) for potential transmission. Isolate names are given in the format “Patient Number”-“Isolate Number”-“Collection Date (DD-MM-YYYY)”. Scale bars for each tree are given in the units SNPs per site. Branch nodes with > 95% Ultrafast bootstrap support are labelled.
