Table 3 Hydrogen and hydrophobic interactions of the complexes and distance among ligands and protein.
Complex | Hydrogen bonds | Hydrophobic interaction | ||
|---|---|---|---|---|
Residue | Distance (Ã…) | Amino acids | Distance (Ã…) | |
OprM-NPC100251 | Thr423(A), Arg419(A), Arg419(B), Asp416(B), Ser420(B), Ser393(B), Thr211(A), Gln427(B), Gln386(B) and Tyr185(A) | 2.46–3.24 | Ala212(A), Gln426(A), Gly215(A), Gln418(A), Leu415(A), Phe422(A), Thr423(A), Ala424(B), Leu389(B), Ala218(B), Asp431(B), Ala216(B) and Thr219(A) | 3.35–4.28 |
OprN-NPC100251 | Asp409(C), Arg412(C), Arg412(B), Asp409(B), Asp409(A), Ser416(B), Ser416(A) and Arg420(B) | 2.17–3.34 | Glu413(B), Arg204(A), Ser211(A), Leu415(A), Asp419(A), Ile169(A), Glu413(A), Arg412(A), Ser416(C), Ala207(B) and Glu413(C) | 3.35–4.02 |
OprJ-NPC100251 | Arg217(A), Leu419(A), Arg415(A), Ser416(B), Arg415(C), Asp412(B), Ser416(A), Gln210(B), Ser416(C) and Asn420(C) | 2.70–3.13 | Gln210(A), Glu214(A), Ile422(A), Phe418(A), Arg415(A), Leu419(B), Asp412(C), Leu419(C), Leu385(C) and Ala423(C) | 3.4–4.54 |
OprA-NPC100251 | Arg420(B), Arg474(C), Asp471(B), Glu478(B), Glu478(A), Ser475(A), Glu478(C) and Arg474(B) | 2.85–3.20 | Ser270(B), Arg474(A), Glu482(A), Gln441(B), Met266(C), Asp471 and Phe477(B), | 3.44–3.86 |
TolC-NPC100251 | Asp374(C), Thr378(A), Asn167(C), Thr163(C), Asp374(A), Asn381(C) and Thr378(C) | 2.65–3.34 | Val370(B), Gln129(C), Val164(C), Gln160(C), Mse358(A), Asp374(B), Thr377(C) and Mse358(C) | 2.88–4.4 |