Table 3 Hydrogen and hydrophobic interactions of the complexes and distance among ligands and protein.

From: Targeting and ultrabroad insight into molecular basis of Resistance-nodulation-cell division efflux pumps

Complex

Hydrogen bonds

Hydrophobic interaction

Residue

Distance (Ã…)

Amino acids

Distance (Ã…)

OprM-NPC100251

Thr423(A), Arg419(A), Arg419(B), Asp416(B), Ser420(B), Ser393(B), Thr211(A), Gln427(B), Gln386(B) and

Tyr185(A)

2.46–3.24

Ala212(A), Gln426(A), Gly215(A), Gln418(A), Leu415(A), Phe422(A), Thr423(A), Ala424(B), Leu389(B), Ala218(B), Asp431(B), Ala216(B) and Thr219(A)

3.35–4.28

OprN-NPC100251

Asp409(C), Arg412(C), Arg412(B), Asp409(B), Asp409(A), Ser416(B),

Ser416(A) and Arg420(B)

2.17–3.34

Glu413(B), Arg204(A), Ser211(A), Leu415(A), Asp419(A), Ile169(A), Glu413(A), Arg412(A), Ser416(C), Ala207(B) and Glu413(C)

3.35–4.02

OprJ-NPC100251

Arg217(A), Leu419(A), Arg415(A), Ser416(B), Arg415(C), Asp412(B),

Ser416(A), Gln210(B), Ser416(C) and Asn420(C)

2.70–3.13

Gln210(A), Glu214(A), Ile422(A), Phe418(A), Arg415(A), Leu419(B), Asp412(C), Leu419(C), Leu385(C) and Ala423(C)

3.4–4.54

OprA-NPC100251

Arg420(B), Arg474(C), Asp471(B), Glu478(B), Glu478(A), Ser475(A), Glu478(C) and Arg474(B)

2.85–3.20

Ser270(B), Arg474(A), Glu482(A), Gln441(B), Met266(C), Asp471 and Phe477(B),

3.44–3.86

TolC-NPC100251

Asp374(C), Thr378(A), Asn167(C), Thr163(C), Asp374(A), Asn381(C) and Thr378(C)

2.65–3.34

Val370(B), Gln129(C), Val164(C), Gln160(C), Mse358(A), Asp374(B), Thr377(C) and Mse358(C)

2.88–4.4

  1. Due to the large amounts of data, only some of the better docking complexes were presented in this table.