Figure 2
From: Pathogenome comparison and global phylogeny of Escherichia coli ST1485 strains
Source niches are denoted with different colors. All strains in the clade containing the sequenced reference strain CFSAN061771 are given in blue.
Pan-genome comparison of 85 E. coli ST1485 strains. (A) Phylogenetic tree constructed by FastTree 2 version 2.1.953 based on accessory genes. (B) Matrix plot, which shows the presence and absence of each gene across all strains by blue and white, respectively. A complete list of annotated genes is provided in the Supplementary Table 1. Red arrow refers to the pCFSAN061771_02 like plasmid genes that are outlined by red squares, while the orange arrow refers to pCFSAN061771_01 like plasmid genes that are outlined by orange square.
