Table 1 Overview of datasets included in this study. All data was generated for this study unless otherwise indicated.
From: Metagenomic DNA sequencing to quantify Mycobacterium tuberculosis DNA and diagnose tuberculosis
Cohort | Origin | Disease | Biofluid | Patients | Samples |
|---|---|---|---|---|---|
Endemic | Peru | Environmental enteropathy | Plasma | 61 | 61 |
Urine | 23 | 23 | |||
Non-endemic | USA | Kidney transplant10 | Urine | 82 | 141 |
Plasma | 6 | 39 | |||
Healthy | Oral swab | 2 | 3 | ||
Tuberculosis | Philippines12 | Sputum positive | Urine | 30 | 30 |
Sputum negative | Urine | 28 | 28 | ||
Peru | Sputum positive | Plasma | 17 | 17 | |
Sputum negative | Plasma | 44 | 44 | ||
Uganda | Sputum positive | Oral swab | 27 | 27 | |
Sputum negative | Oral swab | 15 | 15 |
