Table 1 Structure of data.
Variable | Totals | With Mendelian errors (ME) |
|---|---|---|
Number of individuals | 492 | 478 |
Number of parent–offspring trios | 478 | |
Number of families | 61 | |
Number of boars | 15 | |
Number of sows | 28 | |
Number of litters | 96 | |
Mean offspring per family | 7.8 [1; 34] | |
Mean offspring per litter | 5.0 [1; 12] | |
Number of genotypes | 545,364 | 40,304 |
Mean number of sites per autosome | 30,298 [13,334; 62,927] | 2239 [765; 5044] |
Mendelian mismatches | 292,297 | |
Mean number of ME per individual | 611.5 [331; 2016] | |
Number of CNV identified | 3549 | 2262 |
Number of SNPs within CNV | 56,737 | 13,359 |
Number of sites overlapping SINEs | 26,676 | 2058 |
Number of sites overlapping LINEs | 92,972 | 8889 |
