Table 1 Sample origin and SNP Diversity by geographic location.
Region | Country | Pf. SNP Diversity | Pf. N* | Pf. % | Pv. SNP Diversity | Pv. N** | Pv. % |
|---|---|---|---|---|---|---|---|
West Africa | Benin | 0.040 | 76 | 1.3 | – | – | – |
Burkina Faso | 0.028 | 86 | 1.4 | – | – | – | |
Gambia | 0.035 | 164 | 2.8 | – | – | – | |
Ghana | 0.033 | 928 | 15.6 | – | – | – | |
Guinea | 0.040 | 161 | 2.7 | – | – | – | |
Ivory Coast | 0.034 | 70 | 1.2 | – | – | – | |
Mali | 0.034 | 378 | 6.3 | – | – | – | |
Mauritania | 0.035 | 77 | 1.3 | – | – | – | |
Nigeria | 0.050 | 18 | 0.3 | – | – | – | |
Senegal | 0.039 | 84 | 1.4 | – | – | – | |
East Africa | Kenya | 0.035 | 116 | 1.9 | – | – | – |
Tanzania | 0.035 | 320 | 5.4 | – | – | – | |
Uganda | 0.053 | 15 | 0.3 | – | – | – | |
Horn of Africa | Ethiopia | 0.048 | 25 | 0.4 | 0.060 | 44 | 6.7 |
Central Africa | Cameroon | 0.033 | 237 | 4.0 | – | – | – |
South Central Africa | DRC | 0.032 | 339 | 5.7 | – | – | – |
Southern Africa | Madagascar | 0.040 | 24 | 0.4 | – | – | – |
Malawi | 0.027 | 29 | 0.5 | – | – | – | |
South Asia | India | – | – | – | 0.062 | 40 | 6.1 |
Bangladesh | 0.037 | 83 | 1.4 | – | – | – | |
South East Asia (SEA) | Cambodia | 0.040 | 1118 | 18.8 | 0.049 | 70 | 10.6 |
Laos | 0.039 | 126 | 2.1 | – | – | – | |
Myanmar | 0.039 | 246 | 4.1 | 0.061 | 27 | 4.1 | |
Thailand | 0.038 | 928 | 15.6 | 0.056 | 160 | 24.3 | |
Vietnam | 0.036 | 147 | 2.5 | 0.048 | 13 | 2.0 | |
China | – | – | – | 0.066 | 12 | 1.8 | |
Southern SEA (SSEA) | Malaysia | – | – | – | 0.040 | 48 | 7.3 |
South America | Colombia | 0.046 | 16 | 0.3 | 0.055 | 30 | 4.6 |
Peru | 0.037 | 24 | 0.4 | 0.059 | 88 | 13.4 | |
Brazil | – | – | – | 0.061 | 82 | 12.5 | |
Mexico | – | – | – | 0.039 | 20 | 3.0 | |
Oceania | PNG | 0.040 | 120 | 2.0 | 0.037 | 24 | 3.6 |
Total | – | – | 5955 | 100 | – | 658 | 100 |
