Figure 2 | Scientific Reports

Figure 2

From: Comparison of calling pipelines for whole genome sequencing: an empirical study demonstrating the importance of mapping and alignment

Figure 2

Runtime comparison of the 6 pipelines. The first row in the legend on the x-axis displays the approach used for mapping and alignment. The second row in the legend on the x-axis displays the variant caller used. In detail: D/D: DRAGEN for mapping and alignment and variant calling. D/DV: DRAGEN for mapping and alignment, DeepVariant for variant calling. D/G: DRAGEN for mapping and alignment, GATK with Haplotypecaller not in the DRAGEN mode for variant calling. G/D: GATK for mapping and alignment, GATK with Haplotypecaller in the DRAGEN mode for variant calling. G/DV: GATK for mapping and alignment, DeepVariant for variant calling. G/G: GATK for mapping and alignment, GATK without Haplotypecaller in the DRAGEN mode for variant calling.

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