Table 3 The pathways with the highest magnitude SVM weights summed over all experiments and times.

From: Pathway expression analysis

Reactome ID

Pathway name

R-HSA-163680

AMPK inhibits chREBP transcriptional activation activity

R-HSA-264876

Insulin processing

R-HSA-8937144

Aryl hydrocarbon receptor signalling

R-HSA-5676594

TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway

R-HSA-9634635

Estrogen-stimulated signaling through PRKCZ

R-HSA-5603037

IRAK4 deficiency (TLR5)

R-HSA-74713

IRS activation

R-HSA-3595177

Defective CHSY1 causes TPBS

  1. CPE configurations are pre-computed, directed edges with PageRank centrality. All experiments apply LIMMA using subject identifier to the data.
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