Table 2 Comparison of discordant antibiotic resistance phenotypes between ETT-deposited BF and colonization/infection sites for eleven patients.

From: Endotracheal tube biofilm in critically ill patients during the COVID-19 pandemic : description of an underestimated microbiological compartment

Patient

Bacterial species

MIC in BF (mg/L)

Resistance phenotype in BF

MIC in colonization site (mg/L)

Discordant phenotype from colonization sites

Most suspected resistance mechanism

Highest resistance in BF

1

Stenotrophomonas maltophilia

 > 16

TMP/SMX-resistant

0,125

TMP/SMX-susceptible (TBA-BAL)

Acquisition of sul genes

 + 

6

Staphylococcus aureus

32 (Benzylpenicillin)

Penicillinase

0,06

Wild-type (TBA-BAL)

Acquisition of blaZ genes

 + 

12

Escherichia coli

32 (Piperacillin/tazobactam)

High-level penicillinase

 < 4

Low-level penicillinase (urinalysis)

Acquisition of blaTEM genes

 + 

13

Escherichia coli

16 (Ampicillin)

Low-level penicillinase

2

Wild-type (blood culture)

Hyperproduction of the acquired penicillinase

 + 

14

Stenotrophomonas maltophilia

24

Ceftazidime-resistant

4

Wild-type (TBA-BAL)

Hyperproduction of the chromosomal β-lactamase (L2)

 + 

21

Staphylococcus haemolyticus

 < 0,03

Rifampin-susceptible

 > 2

Rifampin-resistant (blood culture)

Mutation in rpoB genes

26

Pseudomonas aeruginosa

8

Gentamicin-resistant

3

Gentamicin-susceptible (TBA-BAL)

Acquisition of aac genes

 + 

27

Klebsiella aerogenes

16 (ceftazidime)

High-level cephalosporinase

 < 1

Wild-type (TBA-BAL)

Hyperproduction of the chromosomal cephalosporinase (AmpC)

 + 

36

Staphylococcus aureus

 > 4

Erythromycin-resistant

1

Erythromycin-susceptible (TBA-BAL)

Acquisition of erm genes

 + 

49

Raoultella ornithinolytica

1 (Amoxicillin/clavulanic acid)

Wild-type

32

High-level penicillinase (TBA-BAL)

Hyperproduction of the chromosomal penicillinase

57

Pseudomonas aeruginosa

 > 128

Ceftazidime-resistant

1

Wild-type (TBA-BAL)

Hyperproduction of the chromosomal cephalosporinase (AmpC)

 + 

  1. BAL bronchoalveolar lavage, BF biofilm, TBA tracheobronchial aspirate, TMP/SMX trimethoprim/sulfamethoxazole.