Figure 5 | Scientific Reports

Figure 5

From: AmiA and AliA peptide ligands are secreted by Klebsiella pneumoniae and inhibit growth of Streptococcus pneumoniae

Figure 5

Prediction of peptide-protein interface of S. pneumoniae strain 110.58 for (a) AmiA and its peptide ligand (b) AliA and its peptide ligand. AlphaFold models of oligopeptide-binding proteins AmiA and AliA from 110.58 were used together with the sequence of AmiA and AliA peptide ligand respectively to predict the peptide-binding interface with PepNN. The colour represents the residue interaction propensity index, with 0 representing low index and low likelihood to be at peptide-protein interaction interface and 1 representing high index and likelihood to be at peptide-protein interaction interface. Visualization with PyMol.

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