Table 2 InDel polymorphisms identified in the genome sequences of seven hill pigeons and seven feral/domestic pigeons.

From: Development of InDel markers for interspecific hybridization between hill pigeons and feral pigeons based on whole-genome re-sequencing

Species

Sample ID

Ref homo

Alt homo

No. of InDels

Hill pigeon

NIBRGR0000605614

573,905

231,756

805,661

NIBRGR0000605618

560,700

244,724

805,424

NIBRGR0000605610

551,728

241,624

793,352

NIBRGR0000605613

554,981

259,896

814,877

NIBRGR0000617910

571,252

235,040

806,292

NIBRGR0000605620

535,554

233,064

768,618

SRS346866

451,230

226,154

677,384

Feral pigeon

NIBRGR0000605604

278,226

430,118

708,344

SRS346884

264,744

183,556

448,300

SRS346865

283,893

198,898

482,791

SRS346899

230,743

77,117

307,860

SRS346873

253,676

90,466

344,142

SRS346877

242,258

92,549

334,807

Clive_1.0

27,384

198,646

226,030

  1. Ref homo a relationship that is homozygous with the reference (feral pigeon) group, Alt homo a relationship that is homozygous with the alteration (hill pigeon) group.
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