Table 3 Haplotypes based on SNPs from complete CENH3 genic data: the table reports SNP in the affected codons (columns) for sixteen haplotypes (rows).

SNP/ Haplotype	Codon 23	Codon 36	Codon 38	Codon 39	Codon 61	Codon 63	Codon 74	Codon 85	Codon 95	Codon 138	Codon 139	Codon 155	Codon 158	Indel intron 3	Indel intron 6
OsCENH3	GAA	GGC	ACG	GGT	AAG	AGG	GCA	ACC	TCT	TGC	GCC	GCC	ATC	–	–
H1	GAG	GGG	ACG	GGT	AAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H2	GAG	GGG	ACG	GGG	AAG	AGG	GCA	ACC	TCT	TGC	GCC	GCC	ATC	–	–
H3	GAG	GGC	ACG	GGT	AAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H4	GAG	GGG	ACG	GGG	AAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H5	GAG	GGG	GCG	GGT	AAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H6	GAG	GGT	ACG	GGT	AAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H7	GAG	GGT	ACG	GGT	AAG	AGG	GCG	ACC	TCT	TGC	GCC	GCC	ATC	–	–
H8	GAG	GGC	ACG	GGT	GAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H9	GAG	GGC	ACG	GGT	AAG	AGG	GCG	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H10	GAA	GGC	ACG	GGT	GAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H11	GAA	GGC	ACG	GGT	AAG	AGG	GCG	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H12	GAG	GGC	ACG	GGT	AAG	ACG	GCA	ACT	TCC	TGT	GCC	GCT	ATT	39	38
H13	GAG	GGC	ACG	GGT	AAG	ACG	GCA	ACT	TCC	TGT	GCC	GCC	ATC	39	38
H14	GAG	GGT	ACG	GGT	AAG	AGG	GCA	ACT	TCT	TGC	GCA	GCC	ATC	–	–
H15	GAA	GGC	ACG	GGT	AAG	AGG	GCA	ACT	TCT	TGC	GCC	GCC	ATC	–	–
H16	GAG	GGC	ACG	GGT	AAG	AGG	GCA	ACC	TCT	TGC	GCC	GCC	ATC

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