Table 4 Haplotype characterization of Oryza genus CENH3 protein sequences based off their alignment with rice CENH3: Haplotypes were mined on basis of variations observed in protein sequences when compared to reference.

Species	Accession number	Genome	Protein length (amino acid residues)	e-value	%identity	SNPs observed in HFD	Haplotype	Haplotype on basis of HFD
Oryza alta	D0EKP8	CCDD	164	1.90E−100	90.9	I131L, M152I	Hα	H-I
Oryza alta	D0EKP9	CCDD	166	1.00E−104	93.4	P70S, L117I	Hβ	H-II
Oryza australiensis	D0EKQ2	EE	164	4.40E−91	88.5	I131L, M152I	Hγ	H-I
Oryza barthii	A0A0D3G978	AA	146	3.40E−97	89	none	Hδ	H-III
Oryza glumipatula	A0A0E0A0Z6	AA	164	1.80E−114	100	none	Hε	H-III
Oryza latifolia	E2GIB7	CCDD	166	1.10E−104	93.4	P70S, L117I	Hβ	H-II
Oryza latifolia	E2GIB8	CCDD	164	1.90E−100	90.9	I131L, M152I	Hα	H-I
Oryza meridonalis	A0A0E0DTC0	AA	164	1.80E−114	100	none	Hε	H-III
Oryza meyeriana vra. Granulata	A0A6G1EGA2	GG	146	1.90E−91	82	K80R, T84S, D108E, S110T, L114Y, L118V, I131L, M152I, R162H, P163S	Hζ	H-IV
Oryza minuta	DOEKQ0	BBCC	166	3.84E−103	92.2	K83R	Hη	H-V
Oryza minuta	D0EKQ1	BBCC	166	9.24E−104	92.8	P70S, L117I	Hθ	H-II
Oryza nivara	A0A0E0HG58	AA	164	1.80E−114	100	none	Hε	H-III
Oryza officianalis	E2GIB6	CC	166	9.24E−104	92.8	P70S, L117I	Hθ	H-II
Oryza punctata	D0EKQ3	BBCC	166	2.20E−102	96.6	K83R	Hκ	H-V
Oryza punctata	A0A0E0L436	BBCC	170	6.40E−87	91.3	K83R	Hλ	H-V
Oryza rufipogon	A0A0E0PP98	AA	164	1.80E−114	100	none	Hε	H-III
Oryza rhizomatis	D0EKQ4	CC	166	9.24E−104	92.8	P70S, L117I	Hθ	H-II
Oryza sativa ssp indica	B8AZH6	AA	164	1.80E−114	100	none	Hε	H-III

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