Table 3 Polymorphic markers used for linkage analysis.

From: QTL mapping for seed density per silique in Brassica napus

Markers

Primer sequences

Locationa

Forward (5′-3′)

Reverse (5′-3′)

Nys9A136

TCTCCAACTCGATTCCTTTA

CCCACAAACACATGTAATCA

36814457–36814567

Nys9A366

GTGGAGAAAAAGGAAGGATT

TGATACCCAAAAATGGTAGC

37172608–37172896

Nys9A458

GCATTGGTCTTCAAAGAAAC

GCTGGCATTTAGTGATTTTC

40879333–40879599

Nys9A471

ATCTATCATCTCCATGTGCC

GTACCACCACCACATAGCTT

41227405–41227580

Nys9A503

GAACAAAAGGATTCACAAGG

ACTCGACAGAAAGGACAAGA

41999032–41999244

Nys9A508

GTTGCTTGATTTAGGGTTTG

CGAAAGTAAAGCTCTCGTGT

42115771–42116068

Nys9A511

ATGGAACTCAGAGATTGGTG

AGCAGAGTCTGACGAAACAT

42196513–42196746

Nys9A190

TTTTAGAACGGAGCGTAAAG

TAGGATTTGGTGGAGAAGAA

42228643–42228762

Nys9A531

GTTCTCATCTTTCTTGACGC

TGGTGCTTTAGGTTTCACTT

42630577–42630786

Nys9A534

AGACCCAAGAGGAAAAGAAC

ACCTTCCATTGTACACGAAC

42683900–42684063

Nys9A535

CTTTCTCGATCCTTCATACG

CCGACCACTGAAAAATTAAC

42689011–42689169

Nys9A537

CACAGGAACGGTTAGTTCTC

CGGAGAAGTAAGTCTCCAAA

42719951–42720183

Nys9A558

CTACTACACCTGCTGCACAA

AACACGAAGCTCTTTTCTTG

43130463–43130633

Nys9A256

CAGTGGCCTCTAGTGTTTTC

AAGTATAACCGCCATACCCT

44757606–44757796

Nys9A258

TGGGAATAGGATACCTTGTG

AAAGTCAGCGAAGATGTGTT

44795100–44795254

  1. aLocation is the marker position on chromosome A09 of the reference genome sequence.