Table 2 Gene classification of S. lepifera.
Category | Group of genes | Gene name |
|---|---|---|
Photosynthesis | Photosystem I | psaA,psaB,psaC,psaI,psaJ,psaM |
Photosystem II | psbA(2),psbB,psbC,psbD,psbE,psbF,psbH,psbI,psbJ,psbK,psbL,psbM,psbN,psbT,psbZ | |
NADH dehydrogenase | ndhA*,ndhB*,ndhC,ndhD,ndhE,ndhF,ndhG,ndhH,ndhI,ndhJ,ndhK | |
Cytochrome b/f complex | petA,petB*,petD*,petG,petL,petN | |
ATP synthase | atpA,atpB,atpE,atpF*,atpH,atpI | |
Rubisco | rbcL | |
Photochlorophyllide reductase | chlB,chlL,chlN | |
Self-replication | Large ribosomal subunit | rpl14,rpl16*,rpl2*,rpl20,rpl21,rpl22,rpl23,rpl32,rpl33,rpl36 |
Small ribosomal subunit | rps11,rps12**(2),rps14,rps15,rps16*,rps18,rps19,rps2,rps3,rps4,rps7(2),rps8 | |
RNA polymerase | rpoA,rpoB,rpoC1*,rpoC2 | |
rRNAs | rrn16(2),rrn23(2),rrn4.5(2),rrn5(2) | |
tRNAs | trnA-UGC*(2),trnC-GCA,trnD-GUC,trnE-UUC,trnF-GAA,trnG-GCC,trnG-UCC*,trnH-GUG(2),trnI-CAU,trnI-GAU*(2),trnL-CAA*,trnL-UAG,trnM-CAU,trnN-GUU(2),trnP-GGG,trnP-UGG,trnQ-UUG,trnR-ACG(2),trnR-UCG,trnR-UCU,trnS-GCU,trnS-GGA,trnS-UGA,trnT-GGU,trnW-CCA,trnY-GUA,trnfM-CAU | |
Other genes | Maturase | matK |
Protease | clpP** | |
Envelope membrane protein | cemA | |
Acetyl-coa carboxylase | accD | |
c-type cytochrome synthesis gene | ccsA | |
Translation initiation factor | infA | |
Conserved open reading frames | ycf1,ycf12,ycf2(2),ycf3**,ycf4 |
