Table 4 GO function enrichment analysis of common differentially expressed genes of cultivated and wild grape species.

From: Differentially expression analyses in fruit of cultivated and wild species of grape and peach

GO

GO term

Number

P-value

Cellular component

Integral component of membrane

119

2.19E − 04

Nucleus

96

3.44E − 09

Plasma membrane

79

2.32E − 02

Mitochondrion

27

5.91E − 03

Golgi membrane

9

2.77E − 02

Nucleoplasm

2

1.59E − 02

Molecular function

ATP binding

58

3.11E − 26

Zinc ion binding

36

1.63E − 02

DNA binding

30

1.14E − 08

Sequence-specific DNA binding transcription factor activity

20

2.09E − 06

RNA binding

19

8.57E − 03

Protein serine/threonine kinase activity

11

9.39E − 15

Ligase activity

9

1.83E − 02

Nucleic acid binding

3

4.76E − 03

Phosphoprotein phosphatase activity

2

4.90E − 02

Calmodulin binding

2

4.38E − 03

Serine-type endopeptidase activity

1

2.13E − 02

ADP binding

1

3.36E − 23

Biological process

Transcription, DNA-templated

38

2.00E − 08

Regulation of transcription, DNA-templated

25

1.41E − 06

Defense response

17

2.54E − 10

Protein transport

8

4.18E − 02

Embryo development ending in seed dormancy

6

2.04E − 02

mRNA processing

4

2.47E − 03

Plant-type hypersensitive response

3

2.26E − 04

Metabolic process

2

3.80E − 02

Flower development

2

4.05E − 03

DNA replication

1

1.08E − 02

DNA repair

1

8.21E − 05

DNA recombination

1

2.13E − 02

Intracellular protein transport

1

1.96E − 02

Mitotic nuclear division

1

1.81E − 02

Chromatin modification

1

1.87E − 02

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