Table 5 Genetic diversity analysis of 85 current breeding lines at 26 polymorphic simple sequence repeat (SSR) loci and 1 insertion-deletion (InDel) loci.

Marker	Major.Allele.Frquency	GenotypeNo	SampleSize	No. of obs	AlleleNo	GeneDiversity	Heterozygosity	PIC
Hpms1-214	0.35	8	85	85	7	0.72	0.01	0.67
Gpms104	0.49	7	85	85	8	0.57	0.93	0.47
Epms331	0.28	14	85	85	11	0.82	0.06	0.79
Epms755	0.66	3	85	85	2	0.45	0.02	0.35
Epms397	0.21	13	85	85	9	0.84	0.05	0.82
Es350	0.99	2	85	85	2	0.01	0.01	0.01
Gpms6	0.97	3	85	85	3	0.06	0.06	0.06
InDel-3–5	0.33	10	85	85	11	0.80	0.01	0.78
Hpms1-111	0.56	10	85	85	7	0.61	0.09	0.57
Epms386	0.58	7	85	85	7	0.59	0.01	0.55
HpmsAT2-14	0.95	4	85	85	3	0.09	0.02	0.09
Epms391	0.83	4	85	85	3	0.29	0.01	0.25
Epms310	0.50	10	85	85	9	0.69	0.01	0.66
HpmsE095	0.93	4	85	85	4	0.13	0.00	0.13
Gpms101	0.59	6	85	85	5	0.50	0.07	0.39
Epms725	0.98	3	85	85	3	0.03	0.01	0.03
HpmsCaSIG19	0.32	15	85	85	8	0.79	0.12	0.76
Epms419	0.66	9	85	85	6	0.52	0.05	0.48
HpmsE008	0.45	7	85	85	4	0.69	0.04	0.64
HpmsE088	0.59	9	85	85	9	0.60	0.00	0.57
EPMS680	0.85	4	85	85	4	0.27	0.00	0.26
Epms342	0.66	23	85	85	19	0.55	0.15	0.54
GPMS29	0.46	9	85	85	8	0.72	0.04	0.68
Hpms2-24	0.71	7	85	85	6	0.46	0.02	0.42
HpmsE013	0.71	6	85	85	6	0.47	0.00	0.43
Gpms169	0.81	7	85	85	7	0.33	0.01	0.32
HpmsE128	0.68	5	85	85	4	0.45	0.04	0.37
Mean	0.63	7.7	85	85	6.5	0.48	0.07	0.45

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