Table 2 Predictive docking scores and particular interactions of the ligands and the protein.

From: Anticancer evaluation and molecular docking of new pyridopyrazolo-triazine and pyridopyrazolo-triazole derivatives

Cpd. No

Binding energy (S) Kcal/mol

RMSD

Distance (Å)

Binding interactions

Ligand

Receptor

Interaction type

3a

− 6.8678

1.3586

3.37

N-atom of pyridine ring

Asn 575

H–acceptor

3.38

N-atom of pyrazole-ring

Lys 501

H–acceptor

3.75

Pyrazole-ring

Tyr 472

π–π

3.98

Triazine‐ring

Phe 480

π–π

3.78

Triazine‐ring

Tyr 472

π–π

3b

− 6.4952

0.8897

3.28

N-atom of pyridine ring

His 483

H–acceptor

4.29

Methyl (CH3)

Phe 480

H–π

3c

− 6.3936

1.1003

3.39

N-atom of pyridine ring

His 483

H–acceptor

3.67

Methyl (CH3)

Tyr 472

H–π

4.22

Methyl (CH3)

Phe 480

H–π

4.67

Pyridine‐ring

His 571

π–H

3d

− 6.7661

1.0013

3.4

N-atom of amid group

Leu 536

H–donor

4.3

Triazine‐ring

Cys 481

π–H

3.76

Pyridine‐ring

His 483

π–π

3e

− 6.6978

1.0001

3.26

N-atom of pyridine ring

His 483

H–acceptor

3.17

O-atom of methoxy

Gln 75

H–acceptor

4.18

Methyl (CH3)

Phe 480

H–π

5a

− 7.7362

0.7456

3.51

N-atom of pyridine ring

Lys 501

H–acceptor

3.51

N-atom of pyrazole ring

Lys 501

H–acceptor

2.84

O-atom of carbonyl (CO)

His 483

H–acceptor

3.21

O-atom of carbonyl (CO)

His 571

H–acceptor

3.75

Pyrazole‐ring

Tyr 472

π–π

3.91

Triazine-ring

Phe 480

π–π

6a

− 7.8182

0.8162

3.64

N-atom of pyridine ring

Asn 575

H–acceptor

3.22

S-atom of thioamide group

His 571

H–acceptor

3.83

Pyrazole‐ring

Tyr 472

π–π

7

− 7.2146

0.6854

3.01

Cl-atom

Asn 493

H–acceptor

3.11

O-atom of carbonyl

His 483

H–acceptor

2.95

O-atom of carbonyl Pyrazole‐ring

His 571

H–acceptor

3.9

 

Tyr 472

π–π

9a

− 6.0161

1.4017

3.25

N-atom of pyridine ring

Asn 493

H–acceptor

3.5

O-atom of carbonyl Phenyl‐ring

Lys 501

H–acceptor

4.17

Pyridine‐ring

Phe 480

π–H

4.48

Pyrazole‐ring

His 571

π–H

3.99

 

Tyr 472

π–π

9b

− 6.3226

1.1326

2.93

O-atom of carbonyl

Lys 501

H–acceptor

4.15

Phenyl‐ring

Phe 480

π–H

3.83

Triazole‐ring

Tyr 472

π–π

3.63

Pyridine‐ring

His 483

π–π

10

− 6.1633

1.4107

3.26

N-atom of pyridine ring

His 483

H–acceptor

3.78

Methyl (CH3)

Tyr 472

H–π

3.54

Triazole‐ring

Phe 480

π–H

11

− 7.2031

0.7554

3.07

O-atom of carbonyl

Asn 493

H–acceptor

3.34

O-atom of 2-Pyranone

Lys 501

H–acceptor

3.85

2-Pyranone‐ring

Phe 480

π–π

3.67

2-Pyranone‐ring

Tyr 472

π–π

12

− 6.5458

1.4461

3.44

N-atom of pyridine ring

Lys 501

H–acceptor

3.86

N-atom of pyrazole-ring

Lys 501

H–acceptor

3.73

Pyrazole‐ring

Tyr 472

π–π

3.82

Triazole‐ring

Phe 480

π–π

Doxorubicin

− 7.8585

1.3316

3

O-atom of hydroxyl

Tyr 409

H–acceptor

3.94

Phenyl-ring

Tyr 472

π–π