Table 2 Predictive docking scores and particular interactions of the ligands and the protein.
Cpd. No | Binding energy (S) Kcal/mol | RMSD | Distance (Å) | Binding interactions | ||
|---|---|---|---|---|---|---|
Ligand | Receptor | Interaction type | ||||
3a | − 6.8678 | 1.3586 | 3.37 | N-atom of pyridine ring | Asn 575 | H–acceptor |
3.38 | N-atom of pyrazole-ring | Lys 501 | H–acceptor | |||
3.75 | Pyrazole-ring | Tyr 472 | π–π | |||
3.98 | Triazine‐ring | Phe 480 | π–π | |||
3.78 | Triazine‐ring | Tyr 472 | π–π | |||
3b | − 6.4952 | 0.8897 | 3.28 | N-atom of pyridine ring | His 483 | H–acceptor |
4.29 | Methyl (CH3) | Phe 480 | H–π | |||
3c | − 6.3936 | 1.1003 | 3.39 | N-atom of pyridine ring | His 483 | H–acceptor |
3.67 | Methyl (CH3) | Tyr 472 | H–π | |||
4.22 | Methyl (CH3) | Phe 480 | H–π | |||
4.67 | Pyridine‐ring | His 571 | π–H | |||
3d | − 6.7661 | 1.0013 | 3.4 | N-atom of amid group | Leu 536 | H–donor |
4.3 | Triazine‐ring | Cys 481 | π–H | |||
3.76 | Pyridine‐ring | His 483 | π–π | |||
3e | − 6.6978 | 1.0001 | 3.26 | N-atom of pyridine ring | His 483 | H–acceptor |
3.17 | O-atom of methoxy | Gln 75 | H–acceptor | |||
4.18 | Methyl (CH3) | Phe 480 | H–π | |||
5a | − 7.7362 | 0.7456 | 3.51 | N-atom of pyridine ring | Lys 501 | H–acceptor |
3.51 | N-atom of pyrazole ring | Lys 501 | H–acceptor | |||
2.84 | O-atom of carbonyl (CO) | His 483 | H–acceptor | |||
3.21 | O-atom of carbonyl (CO) | His 571 | H–acceptor | |||
3.75 | Pyrazole‐ring | Tyr 472 | π–π | |||
3.91 | Triazine-ring | Phe 480 | π–π | |||
6a | − 7.8182 | 0.8162 | 3.64 | N-atom of pyridine ring | Asn 575 | H–acceptor |
3.22 | S-atom of thioamide group | His 571 | H–acceptor | |||
3.83 | Pyrazole‐ring | Tyr 472 | π–π | |||
7 | − 7.2146 | 0.6854 | 3.01 | Cl-atom | Asn 493 | H–acceptor |
3.11 | O-atom of carbonyl | His 483 | H–acceptor | |||
2.95 | O-atom of carbonyl Pyrazole‐ring | His 571 | H–acceptor | |||
3.9 | Tyr 472 | π–π | ||||
9a | − 6.0161 | 1.4017 | 3.25 | N-atom of pyridine ring | Asn 493 | H–acceptor |
3.5 | O-atom of carbonyl Phenyl‐ring | Lys 501 | H–acceptor | |||
4.17 | Pyridine‐ring | Phe 480 | π–H | |||
4.48 | Pyrazole‐ring | His 571 | π–H | |||
3.99 | Tyr 472 | π–π | ||||
9b | − 6.3226 | 1.1326 | 2.93 | O-atom of carbonyl | Lys 501 | H–acceptor |
4.15 | Phenyl‐ring | Phe 480 | π–H | |||
3.83 | Triazole‐ring | Tyr 472 | π–π | |||
3.63 | Pyridine‐ring | His 483 | π–π | |||
10 | − 6.1633 | 1.4107 | 3.26 | N-atom of pyridine ring | His 483 | H–acceptor |
3.78 | Methyl (CH3) | Tyr 472 | H–π | |||
3.54 | Triazole‐ring | Phe 480 | π–H | |||
11 | − 7.2031 | 0.7554 | 3.07 | O-atom of carbonyl | Asn 493 | H–acceptor |
3.34 | O-atom of 2-Pyranone | Lys 501 | H–acceptor | |||
3.85 | 2-Pyranone‐ring | Phe 480 | π–π | |||
3.67 | 2-Pyranone‐ring | Tyr 472 | π–π | |||
12 | − 6.5458 | 1.4461 | 3.44 | N-atom of pyridine ring | Lys 501 | H–acceptor |
3.86 | N-atom of pyrazole-ring | Lys 501 | H–acceptor | |||
3.73 | Pyrazole‐ring | Tyr 472 | π–π | |||
3.82 | Triazole‐ring | Phe 480 | π–π | |||
Doxorubicin | − 7.8585 | 1.3316 | 3 | O-atom of hydroxyl | Tyr 409 | H–acceptor |
3.94 | Phenyl-ring | Tyr 472 | π–π | |||