Table 1 Carriage of taxa, pathogens and ARG in COVID-19 cohorts.
COVID-19 cohorta | Total taxa (non-redundant) | Range per sample | Mean | Standard Deviation | Median | Mode | Per sample p-valueb | |||
|---|---|---|---|---|---|---|---|---|---|---|
Taxa | Severe | ild | Asymptomatic | Negative | ||||||
Severe | 35 (10) | 0–5 | 3.2 | 1.5 | 3.2 | 1.5 | ||||
Mild | 956 (127) | 1–77 | 14.9 | 19.4 | 14.9 | 19.4 | 5.3E−06 | 1.1E-02 | ||
Asymptomatic | 263 (102) | 2–36 | 18.8 | 13.2 | 18.8 | 13.2 | 3.3 E−04 | 1.9 E−01 | 5.7 E−03 | |
Mild + Asymptomatic | 1219 (174) | 1–77 | 15.6 | 18.4 | 15.6 | 18.4 | 5.1 E−08 | 3.6 E−03 | ||
Negative_All | 91 (30) | 0–17 | 7.6 | 6.7 | 7.6 | 6.7 | 2.3 E−02 | |||
Never Infected | 10 | 0–5 | 1.0 | 0.7 | 1.0 | 0.7 | 6.7 E−04 | 1.60 E−07 | 1.5 E−04 | |
Recovered | 81 | 8–17 | 12.3 | 4.5 | 12.3 | 4.5 | 6.9 E−04 | 1.9 E−01 | 9.3 E−02 | |
Pathogens | ||||||||||
Severe | 15 | 0–3 | 1.4 | 1.1 | 1.4 | 1.1 | ||||
Mild | 605 | 0–48 | 9.5 | 13.2 | 9.5 | 13.2 | 4.4 E−06 | 7.0 E−02 | ||
Asymptomatic | 146 | 0–29 | 10.4 | 9.2 | 10.4 | 9.2 | 1.4 E−03 | 3.7 E−01 | 7.4 E−02 | |
Mild + Asymptomatic | 751 | 0–48 | 9.6 | 12.5 | 9.6 | 12.5 | 9.8 E−08 | 4.9 E−02 | ||
Negative_All | 73 | 0–14 | 6.1 | 5.3 | 6.1 | 5.3 | 5.3 E−03 | |||
Never Infected | 5 | 0–2 | 1.0 | 0.7 | 1.0 | 0.7 | 2.2 E−01 | 1.9 E−06 | 1.3 E−03 | |
Recovered | 68 | 1–14 | 9.7 | 3.7 | 9.7 | 3.7 | 4.1 E−04 | 4.5 E−01 | 5.0 E−01 | |
ARG | ||||||||||
Severe | 12 | 0–2 | 1.1 | 0.7 | 1 | 1 | ||||
Mild | 238 | 0–31 | 3.7 | 5.1 | 1 | 1 | 1.0 E−04 | 3.4 E−07 | ||
Asymptomatic | 65 | 0–14 | 4.6 | 4.1 | 4 | 1 | 3.5 E−03 | 2.4 E−01 | 6.8 E−04 | |
Mild + Asymptomatic | 303 | 0–31 | 3.9 | 4.9 | 2 | 0 | 5.1 E−06 | 2.5 E−09 | ||
Negative_All | 2 | 0–1 | 0.17 | 0.39 | 0 | 0 | 7.4 E−04 | |||
Never Infected | 0 | na | na | na | na | na | 2.1 E−04 | 1.0 E−07 | 6.1 E−04 | |
Recovered | 2 | 0–1 | 0.3 | 0.5 | 0 | 0 | 5.6 E−03 | 1.1 E−06 | 1.0 E−03 | |
