Table 2 Significant genes from the 30 min timepoint. Gene loci are listed according to NCBI Sterne RefSeq assembly GCF_000832635.1 (Locus AW20) with the RefSeq assembly GCF_000008165.1 loci provided (Locus BAS) where available. Protein name and functions are according to PATRIC and the log₂FC are shown.

Locus (AW20)	Locus (BAS)	Protein id	log₂FC
AW20_1638	BAS1044	Putative membrane protein	10.98
AW20_3494	BAS4692	GerPF/GerPA protein family	5.51
AW20_3546	BAS4643	LolD; ABC transporter-like sensor ATP-binding protein	2.30
AW20_398	BAS2257	CspA; cold shock protein	1.63
AW20_831	BAS1830	Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr	1.17
AW20_3547	BAS4642	ABC-type antimicrobial peptide transport system, permease component	1.07
AW20_3285	BAS4875	Long chain acyl-CoA dehydrogenase (fadN-fadA-fadE operon)	− 1.00
AW20_905	BAS1756	Pdp; Pyrimidine-nucleoside phosphorylase	− 1.09
AW20_2627	BAS0163	FGGY family of carbohydrate kinase	− 1.11
AW20_2257	BAS0482	PflA; Pyruvate formate-lyase activating enzyme	− 1.18
AW20_2081	BAS0631	Ribose operon repressor; transcriptional regulator LacI/PurR family	− 1.20
AW20_2116	BAS0598	TreB; PTS system, trehalose-specific IIBC component	− 1.26
AW20_5282	BAS2949	Magnesium and cobalt transport protein CorA	− 1.33
AW20_3236	BAS4922	Nucleoside transporter, NupC family	− 1.45
AW20_2625	BAS0165	GntP; Gluconate permease, Bsu4004 homolog	− 1.45
AW20_2115	BAS0599	TreC; Trehalose-6-phosphate hydrolase	− 1.46
AW20_453	BAS2203	Oxalate/formate antiporter	− 1.57
AW20_2626	BAS0164	FGGY family of carbohydrate kinase; gluconokinase	− 1.60
AW20_2866	BAS5293	LrgA-associated membrane protein LrgB	− 1.87
AW20_2865	BAS5294	Antiholin-like protein LrgA	− 2.05
AW20_376		Hypothetical protein	− 4.34
AW20_4692	BAS3529	Hypothetical protein; PDDEXK_nuclease-like	− 4.47
AW20_2596	BAS0193	Putative lipoprotein	− 20.02

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