Table 3 Non-AI pathway/geneset enrichment analysis tools.

From: Analysis of cardiac single-cell RNA-sequencing data can be improved by the use of artificial-intelligence-based tools

Technique name

Version

Software platforms

# citations

Tutorial website

Seurat30 Ranksum

4.0

R, DAVID34

10,670

https://satijalab.org/seurat/reference/findallmarkersl

Seurat30 MAST

4.0

R, DAVID34

10,670

https://satijalab.org/seurat/reference/findallmarkers

Seurat30 NegBinom

4.0

R, DAVID34

10,670

https://satijalab.org/seurat/reference/findallmarkers

singleseqgset101

 

R

104

https://arc85.github.io/singleseqgset/articles/singleseqgset.html

ssGSEA78

 

R

13

https://ncborcherding.github.io/vignettes/escape_vignette.html

GSEA20

4.3.2

 

35,629

https://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideFrame.html

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