Table 4 Non-AI scRNAseq trajectory analysis tools.

From: Analysis of cardiac single-cell RNA-sequencing data can be improved by the use of artificial-intelligence-based tools

Technique name

Version

Software platforms

# citations

Tutorial website

Monocle25

3.0

R

4148

http://cole-trapnell-lab.github.io/monocle-release/docs/#constructing-single-cell-trajectories

PAGA27

 

Python

1579

https://scanpy-tutorials.readthedocs.io/en/latest/paga-paul15.html#Reconstructing-gene-changes-along-PAGA-paths-for-a-given-set-of-genes

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