Table 1 Number of SNPs identified at read depth (RD) of 2, 5 and 10 in 6 Indian cattle breeds.

From: ddRAD sequencing based genotyping of six indigenous dairy cattle breeds of India to infer existing genetic diversity and population structure

Breeds

Raw SNPs

Only autosomes

RD 2

RD 5

RD 10

GIC

834,780

809,903

372,122

228,548

79,539

KAC

810,279

786,915

371,371

214,889

50,687

RAC

805,020

780,763

283,706

147,305

30,692

RSC

672,632

652,357

262,982

135,982

32,616

SAC

842,768

816,701

380,696

197,197

35,801

THC

381,966

372,730

168,195

58,253

9141

Total

43,47,445

42,19,369

18,39,072

9,82,174

2,38,476

  1. *GIC Gir, KAC Kankrej, RAC Rathi, RSC Red Sindhi, SAC Sahiwal, THC Tharparkar.
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