Figure 4
Pangenome analysis representation based on anvi'o software. (A) Pangenome reconstructed with two complete genomes of S. suis strains ID35541 and ID38828. Each ring in the graph represents an individual S. suis genome and each ray corresponds with a given gene homolog. The two inner layers are colored in black to mark gene clusters found in that genome or left with a translucent background if the gene cluster is absent from that genome. The third layer shows density plot of number of paralog genes. The outermost ring illustrates the single-copy genes (SCG; brown color) and accessary genes of strain ID35541 and ID38828 in torque and magenta highlight, respectively. Based on anvi’o pangenome analysis, there are 1871 core genes common between two strains ID38828 and ID35541. The accessory genes of strains ID38828 and ID35541 show 54 and 55 genes, respectively. (B) Pan-genome reconstructed with 5 genomes of S. suis strains ID38828, EN314, EN191, E34W, and E11Q. (C) Pan-genome reconstructed with 5 genomes of S. suis strains ID35541, MNCM07, C160, 832, and 812. Each ring in the graph (B and C) represents an individual S. suis genome and each ray corresponds to a given gene homolog. The five inner layers are in black to designate gene clusters in that genome or translucent if the gene cluster is absent. The third layer shows a density plot of number of paralog genes. The outermost ring illustrates the single-copy genes (SCG; brown). UpsetR showing the number of genes that are shared and unique between the genomes.
