Table 7 The best candidate models of interactions of selected attributes related to lung cancer by MDR approach.

From: Common variants of pro-inflammatory gene IL1B and interactions with PPP1R13L and POLR1G in relation to lung cancer among Northeast Chinese

Model factora,b

Attribute

Bal. Acc.c overall

Bal. Acc. CVd training

Bal. Acc. CV testing

CV consistency

P valuee

Whole group

 Lung cancer

  IL1B + PPP1R13L + POLR1G + smoking-duration

   One-factor

Smoking

0.5708

0.5708

0.5708

10/10

0.0040–0.0050

   Two-factor

Smoking

     

rs1143633

0.5849

0.5866

0.5649

5/10

0.0090–0.0100

   Three-factor

Smoking

     

rs3136558

     

rs967591

0.6062

0.6084

0.5602

8/10

0.0100–0.0110

  IL1B + smoking-duration

   One-factor

Smoking

0.5708

0.5708

0.5708

10/10

< 0.0010

   Two-factor

Smoking

     

rs1143633

0.5849

0.5862

0.5721

6/10

< 0.0010

   Three-factor

Smoking

     

rs1143633

     

rs1143630

0.5944

0.5964

0.5619

8/10

< 0.0010

   Fourth-factor

Smoking

     

rs1143633

     

rs3136558

     

rs1143630

0.6112

0.6139

0.5588

10/10

0.0040–0.0050

  IL1B + PPP1R13L + POLR1G

   Two-factor

rs1143633

     

rs1970764

0.5682

0.5689

0.5507

9/10

0.0440–0.0450

   Three-factor

rs1143633

     

rs1970764

     

rs735482

0.5973

0.5987

0.5576

10/10

0.0130–0.0140

  IL1B

   One-factor

rs1143633

0.5451

0.5451

0.5451

10/10

0.0290–0.0300

Histopahtology subgroup

 Lung squamous cell carcinoma

  IL1B + smoking-duration

   One-factor

Smoking

0.6315

0.6318

0.6227

10/10

< 0.0010

   Two-factor

Smoking

     

rs1143633

0.6532

0.6533

0.6472

10/10

< 0.0010

   Three-factor

Smoking

     

rs1143633

     

rs1143630

0.6619

0.6645

0.6123

5/10

< 0.0010

   Fourth-factor

Smoking

     

rs1143633

     

rs3136558

     

rs1143630

0.6785

0.6827

0.5871

10/10

0.0030–0.0040

 Other

  IL1B + smoking-duration

   Two-factor

Smoking

     

rs3136558

0.6178

0.6181

0.6073

10/10

0.0090–0.0100

  1. aAnalyzed by MDR 3.0.3. dev. Jar, data of PPP1R13L + CD3EAP from previous study (Yin et al.18).
  2. bOnly list statistical significant models.
  3. cBalanced accuracy.
  4. dCross-validation.
  5. eP value based on 1000 permutation test. Boldface indicates statistical significance.