Table 2 Statistics for whole-genome sequencing of the mefenoxam-resistant strains of Phytophthora cactorum.

From: Identification of sequence mutations in Phytophthora cactorum genome associated with mefenoxam resistance and development of a molecular assay for the mutant detection in strawberry (F. × ananassa)

 

Spool

Rpool

Total reads

74,540,816

82,532,288

Total mapped reads

71,212,819

78,944,241

Number of variants

131,176

128,796

Number of SNPs

107,883

105,612

Number of insertion

11,344

11,263

Number of deletion

11,949

11,921

Synonymous_variant

17,294

16,842

Non-synonymous_variant

23,077

22,558

Variations in exon

44,566

43,414

Genes with amino acid changes

21,610

21,149

Homozygous genotype

5,597

5,771

  1. The resistant strains (Rpool) were compared with the mefenoxam-sensitive strains (Spool).
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