Table 2 SNPs and indels evaluation in the T. hamiensis var. qatarensis plastome to other related plastomes.

S. no.	Genomes	Complete plastome		LSC		SSC		IRs		PCD
S. no.	Genomes	SNP	Indel	SNP	Indel	SNP	Indel	SNP	Indel	SNP	Indel
1	T. qatarensis–T. simplex	5506	1600	4274	1455	792	168	132	8	3076	911
2	T. qatarensis–T. mongolica1	4918	1926	4552	1787	56	184	4	0	1856	797
3	T. qatarensis–T. mongolica2	4874	1781	4528	1723	40	95	2	0	1852	911
4	T. qatarensis–T. mongolica3	4812	2091	4446	1904	14	161	2	0	1824	1313
5	T. qatarensis–Z. fabafo1	13,144	13,739	9766	9288	2212	3601	378	504	3665	1116
6	T. qatarensis–Z. fabafo2	12,932	10,936	9619	7465	2134	2810	398	190	3506	1540
7	T. qatarensis–Z. fabafo3	12,932	10,936	9592	7361	2214	2979	388	267	3626	1325
8	T. qatarensis–Z. xanthoxylon1	12,638	13,275	9270	6726	2084	2773	418	348	3486	1228
9	T. qatarensis–Z. xanthoxylon2	12,470	10,307	9278	9658	1716	2350	454	1368	3632	2047
10	T. qatarensis–Tr. terrestris	25,902	67,155	20,906	17,481	8294	10,384	508	23,191	8204	33,163
11	T. qatarensis–L. tridentata	28,348	49,513	22,294	14,941	11,702	5280	874	15,727	8424	17,415
12	T. qatarensis–G. angustifolium	27,702	43,460	21,610	15,613	10,432	5670	926	13,904	8474	17,770

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