Table 3 The chromosome-wise distribution of perfect, compound, and imperfect SSRs of Citrus sinensis.
Chromosome | Total Mb | Perfect | Compound | Imperfect | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Mono | di | tri | tetra | Penta | Hexa | Total | SSRs/Mb | Total | SSRs/Mb | Total | SSRs/Mb | ||
Chr-1 | 28.80 | 5265 | 2136 | 1750 | 878 | 229 | 100 | 10,358 | 359.64 | 414 | 14.37 | 45,868 | 1592.60 |
Chr-2 | 30.84 | 5735 | 2286 | 1854 | 903 | 297 | 138 | 11,213 | 363.62 | 387 | 12.55 | 49,210 | 1595.81 |
Chr-3 | 28.71 | 5637 | 2050 | 1712 | 866 | 236 | 106 | 10,607 | 369.40 | 374 | 13.02 | 45,549 | 1586.30 |
Chr-4 | 19.95 | 3646 | 1419 | 1252 | 600 | 231 | 62 | 7210 | 361.35 | 231 | 11.58 | 31,721 | 1589.78 |
Chr-5 | 36.15 | 7231 | 2639 | 2261 | 1054 | 353 | 142 | 13,680 | 378.46 | 493 | 13.64 | 57,338 | 1586.29 |
Chr-6 | 21.18 | 4123 | 1470 | 1220 | 580 | 206 | 85 | 7684 | 362.80 | 252 | 11.9 | 33,554 | 1584.26 |
Chr-7 | 32.21 | 5825 | 2392 | 1986 | 978 | 289 | 107 | 11,577 | 359.48 | 394 | 12.23 | 50,538 | 1569.26 |
Chr-8 | 22.71 | 3991 | 1405 | 1304 | 639 | 212 | 96 | 7647 | 336.71 | 250 | 11.01 | 34,590 | 1523.06 |
Chr-9 | 18.45 | 3513 | 1269 | 1121 | 574 | 185 | 50 | 6712 | 363.78 | 259 | 14.04 | 28,977 | 1570.51 |
Total | 239.00 | 44,966 | 17,066 | 14,460 | 7072 | 2238 | 886 | 86,688 | 3255.25 | 3054 | 114.34 | 377,345 | 14,197.87 |
