Table 8 Chromosome-specific marker statistics for 272 and 935 highly variable SSR primer pairs assayed through ePCR across the 7 citrus genotypes based on their genome sequences (C. sinensis and C. maxima) respectively.

From: Comprehensive genome-wide identification and transferability of chromosome-specific highly variable microsatellite markers from citrus species

C. sinensis

C. maxima

Chr

TP

TPP

N

Na

MAF

Ne

I

Ho

He

uHe

PIC

TP

TPP

N

Na

MAF

Ne

I

Ho

He

uHe

PIC

Chr-1

33

18

2.58

2.21

0.83

1.53

0.46

0.34

0.26

0.3

0.49

102

78

2.86

2.56

0.75

1.75

0.64

0.5

0.37

0.44

0.70

Chr-2

42

37

2.95

2.88

0.71

1.90

0.77

0.58

0.44

0.52

0.82

165

123

2.65

2.56

0.76

1.74

0.64

0.49

0.36

0.44

0.69

Chr-3

41

38

2.98

2.81

0.71

1.87

0.76

0.59

0.44

0.53

0.86

79

61

2.49

2.42

0.76

1.7

0.61

0.48

0.36

0.44

0.72

Chr-4

15

11

2.47

2.27

0.77

1.65

0.56

0.46

0.34

0.41

0.68

98

70

2.7

2.6

0.76

1.74

0.63

0.48

0.35

0.42

0.66

Chr-5

45

35

2.67

2.62

0.75

1.75

0.65

0.49

0.37

0.45

0.73

166

132

2.68

2.56

0.75

1.75

0.65

0.5

0.38

0.46

0.74

Chr-6

19

13

2.32

2.26

0.78

1.64

0.55

0.43

0.32

0.39

0.65

88

63

2.46

2.39

0.77

1.68

0.59

0.46

0.34

0.41

0.67

Chr-7

34

29

2.85

2.62

0.74

1.77

0.68

0.52

0.39

0.47

0.82

90

69

3.04

2.68

0.73

1.84

0.68

0.54

0.39

0.46

0.69

Chr-8

24

22

3.13

3.08

0.70

1.93

0.81

0.6

0.45

0.54

0.85

53

41

2.47

2.4

0.76

1.69

0.6

0.47

0.35

0.43

0.72

Chr-9

19

18

3.32

3.05

0.69

1.96

0.83

0.63

0.47

0.56

0.87

94

64

2.71

2.55

0.77

1.72

0.61

0.46

0.34

0.4

0.62

  1. TP = Total Primer; TPP = Total Polymorphic Primer; N = Average number of Alleles; Na = No. of Different Alleles; MAF = Major Allelic Frequency; Ne = No. of Effective Alleles = 1/(Sum pi^2); I = Shannon's Information Index = − 1* Sum (pi * Ln (pi)); Ho = Observed Heterozygosity = No. of Hets/N; He = Expected Heterozygosity = 1—Sum pi^2; uHe = Unbiased Expected Heterozygosity = (2N/(2N−1)) * He; Where pi is the frequency of the ith allele for the population & Sum pi^2 is the sum of the squared population allele frequencies; PIC = Polymorphic Information Content.
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