Table 2 Total sequencing output by tick sample generated during NAS and control sequencing experiments.
From: Metagenomic surveillance for bacterial tick-borne pathogens using nanopore adaptive sampling
Total reads | Total Bases sequenced (Mb) | Read length N50 (bp) | Mean read quality | |
|---|---|---|---|---|
NAS enrichment | ||||
Tick 1 | 1,154,447 | 421.4 | 397 | 9.9 |
Tick 2 | 1,115,550 | 390.2 | 376 | 9.9 |
Tick 3 | 644,767 | 233.8 | 400 | 10 |
Tick 4 | 1,853,677 | 662.8 | 386 | 9.9 |
Total | 4,768,441 | 1708.2 | 389 | 9.8 |
Control | ||||
Tick 1 | 579,959 | 331.7 | 771 | 10 |
Tick 2 | 606,365 | 302.3 | 605 | 10.1 |
Tick 3 | 360,105 | 226.8 | 1,005 | 10.1 |
Tick 4 | 959,027 | 654.8 | 1,185 | 10.1 |
Total | 2,505,456 | 1515.7 | 888 | 10.1 |
NAS depletion | ||||
Tick 5 | 2,233,967 | 621.3 | 328 | 13.7 |
Tick 6 | 1,494,667 | 392.9 | 317 | 13.6 |
Tick 7 | 712,929 | 186.5 | 312 | 13.6 |
Tick 8 | 837,779 | 247.5 | 348 | 13.5 |
Total | 5,279,342 | 1448.1 | 327 | 13.5 |
