Table 3 Taxonomic classification results for reads generated during NAS and control experiments.
From: Metagenomic surveillance for bacterial tick-borne pathogens using nanopore adaptive sampling
Bacterial tick-borne pathogen genome | ||||||||
|---|---|---|---|---|---|---|---|---|
A. phagocytophilum | B. burgdorferi s.s | B. miyamotoi | E. muris eauclairensis | A. phagocytophilum | B. burgdorferi s.s | B. miyamotoi | E. muris eauclairensis | |
NAS enrichment | Control | |||||||
Tick 1 | 0 | 274(2.4) | 0 | 769(2.1) | 1 | 113 | 0 | 364 |
Tick 2 | 0 | 351(1.8) | 5 | 0 | 0 | 194 | 4 | 1 |
Tick 3 | 0 | 334(1.8) | 1113(2.1) | 2 | 1 | 190 | 523 | 2 |
Tick 4 | 238(1.8) | 218(1.7) | 5 | 2 | 136 | 127 | 2 | 1 |
NAS depletion | ||||||||
Tick 5 | 153 | 657 | 0 | 0 | ||||
Tick 6 | 665 | 1457 | 1 | 146 | ||||
Tick 7 | 4 | 190 | 0 | 0 | ||||
Tick 8 | 14 | 422 | 1 | 0 | ||||
