Table 1 Number of animals and SNP markers for each marker panel used for genotyping animals used in the study.
Chip | Manufacturer | Number of males | Number of females | SNP number |
|---|---|---|---|---|
Zoetis ZL4 (Kalamazoo, MI, USA) | Zoetis | 721 | 307 | 17,794 |
GeneSeek® Genomic Profiler 20 K—Indicine (Lincoln, NE, USA) | Neogen | 145 | – | 19,720 |
GGP Bovine LDv3 (Lincoln, NE, USA) | Neogen | 49 | – | 26,151 |
Zchip (Araçatuba, SP, BR) | Deoxi | 6,617 | 4,210 | 27,553 |
Zoetis Custom SNP ZL5 (Kalamazoo, MI, USA) | Zoetis | 11,703 | 2,878 | 29,842 |
GGP Bovine LDv3 (Lincoln, NE, USA) | Neogen | 1 | 54 | 30,108 |
GGP Indicus 35 K (Lincoln, NE, USA) | Neogen | 10,526 | 9,334 | 35,339 |
Illumina BovineSNP50 (San Diego, CA, USA) | Illumina | 870 | 429 | 54,609 |
GGP Indicus 50 K (Lincoln, NE, USA) | Neogen | 1,569 | 2,198 | 54,791 |
GeneSeek® Genomic Profiler 75 K—Indicine (Lincoln, NE, USA) | Neogen | 3,556 | 1,372 | 74,153 |
Illumina BovineHD BeadChip (San Diego, CA, USA) | Illumina | 2,223 | 3,260 | 777,962 |
