Table 2 Spoligotypes with (sub-)lineages for M. tuberculosis (n = 24,661).
Lineage | Sub-lineage | N (%) | No. spoligotypes (%)* | No. families (%) |
|---|---|---|---|---|
1 | Overall | 2145 (8.8) | 70 (17.2) | 13 (21.7) |
1.1 | 1214 (5.0) | 48 (11.8) | 10 (16.7) | |
1.2 | 931 (3.8) | 32 (7.9) | 8 (13.3) | |
2 | Overall | 7252 (29.7) | 22 (5.4) | 4 (6.7) |
2.1 | 90 (0.4) | 6 (1.5) | 3 (5.0) | |
2.2 | 7162 (29.3) | 17 (4.2) | 2 (3.3) | |
3 | Overall | 2642 (10.8) | 62 (15.2) | 8 (13.3) |
3 | 1765 (7.2) | 54 (13.3) | 6 (10.0) | |
3.1 | 877 (3.6) | 29 (7.1) | 7 (11.7) | |
4 | Overall | 12,128 (49.6) | 244 (60.0) | 39 (65.0) |
4 | 109 (0.4) | 13 (3.2) | 3 (5.0) | |
4.1 | 3348 (13.7) | 96 (23.6) | 21 (35.0) | |
4.2 | 722 (3.0) | 36 (8.8) | 13 (21.7) | |
4.3 | 3710 (15.2) | 80 (19.7) | 18 (30.0) | |
4.4 | 1105 (4.5) | 36 (8.8) | 10 (16.7) | |
4.5 | 385 (1.6) | 38 (9.3) | 13 (21.7) | |
4.6 | 459 (1.9) | 28 (6.9) | 9 (15.0) | |
4.7 | 251 (1.0) | 17 (4.2) | 9 (15.0) | |
4.8 | 1771 (7.2) | 60 (14.7) | 16 (26.7) | |
4.9 | 268 (1.1) | 25 (6.1) | 11 (18.3) | |
5 | Overall | 143 (0.6) | 13 (3.2) | 3 (5.0) |
5.1 | 118 (0.5) | 10 (2.5) | 3 (5.0) | |
5.2 | 18 (0.1) | 2 (0.5) | 1 (1.7) | |
5.3 | 7 (0.0) | 1 (0.2) | 1 (1.7) | |
6 | Overall | 78 (0.3) | 4 (1.0) | 2 (3.3) |
6 | 1 (0.0) | 1 (0.2) | 1 (1.7) | |
6.1 | 13 (0.1) | 2 (0.5) | 1 (1.7) | |
6.2 | 22 (0.1) | 2 (0.5) | 1 (1.7) | |
6.3 | 42 (0.2) | 3 (0.7) | 2 (3.3) | |
7 | Overall | 44 (0.2) | 3 (0.7) | 2 (3.3) |
Bovis | Overall | 229 (0.9) | 8 (1.9) | 3 (4.8) |
