Table 5 The total number of samples which had ASE and ASB compared for each mark and the total number of samples where the ASE and ASB had the same direction.

From: Allele specific binding of histone modifications and a transcription factor does not predict allele specific expression in correlated ChIP-seq peak-exon pairs

 

Correlation

Total samples compared

Total samples with same direction in peak and exon

H3K27ac

Positive

115,036

60,426 (52.5%)

Negative

29,746

15,458 (51.9%)

H3K27Me3

Positive

20,145

10,023 (49.8%)

Negative

35,095

17,305 (49.3%)

H3K4Me3

Positive

70,543

38,088 (54%)

Negative

37,436

19,723 (52.7%)

H3K4Me1

Positive

63,591

32,684 (51.4%)

Negative

37,949

19,454 (51.3%)

CTCF

Positive

82,194

41,525 (50.5%)

Negative

54,762

27,725 (50.6%)

  1. To be compared the peak-exon pair had to be significantly positively or negatively correlated at p < 0.05 and the ASE and ASB in each sample had to be significant at p < 0.05.
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